Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01569 ATGAATTCTTCTTACAAGAGCTTAAAAAGGGCCAATGTAAAGGCAGCTAGCATGGATGAACCAGGTAGAGGAATTGGTTCAGCTGCAGCAGCAGAAGCACATGACAAGAACCAATATCAATCCAACCCCGTGATGTCACCTGCTACCAATCCTCCTATTCTGACCGTTGGTCCTTCTGTCCCTTCGTACTACCCGAGAGAGCATGACTATGCTCTCCAATGCATGCATCGATACCAGCAACAACAGGAGCAGTTGCAGGAAAAAGTCAAGAGCTTTTGGGCACAACAGCTGAAAGACATTGAAGAGAATGCTGATCTAAGGAATCATAGTGTGCCTCTGTCGAGGATTAAGAAGATCATGAAGACTGATGCAGATGTGAAGTTGGTTTCAGCTGAGACTCCTGTGCTGTTTGCCAAGGCCATTGAACTGTTCATAATGGAGCTTACAATGAAGGCTTGGGCCAACGCTGAGGACAACAATAGGAGGACACTTCAGAAGATGGACGTTGCATCTGCAATCGCAAGGACTGATGTGTTTGATTTTCTTGAGGATATTGCTCCCGTGCCAAGGGATGACACAAACACAATGATGCATCAATTGCTTGCAGGCACTGCACCAACTCCAGCTGAGAATGCTCCTTCCTCTTATATGCCACCTCCTCAACATGTGCCAAGGGATGACACAAACACAATGATGCATCAATTGCTTGCAGGCACTGCACCAACTCCAGCTGAGAATGTTCCTTACTCTTATATGCCACCTCCTCAACATGCTGCAATCTCACCACCACCCTTTGTTGATCCTACAACTCTTCATCAAACTCCTCATCCGCTGCAAACCTATTCTCTGTTTCCAATTTCAACAGTCCATCCCGATGAGCAAAACACTTCTCCTATTTCAGATGATTGA 909 0.4598 MNSSYKSLKRANVKAASMDEPGRGIGSAAAAEAHDKNQYQSNPVMSPATNPPILTVGPSVPSYYPREHDYALQCMHRYQQQQEQLQEKVKSFWAQQLKDIEENADLRNHSVPLSRIKKIMKTDADVKLVSAETPVLFAKAIELFIMELTMKAWANAEDNNRRTLQKMDVASAIARTDVFDFLEDIAPVPRDDTNTMMHQLLAGTAPTPAENAPSSYMPPPQHVPRDDTNTMMHQLLAGTAPTPAENVPYSYMPPPQHAAISPPPFVDPTTLHQTPHPLQTYSLFPISTVHPDEQNTSPISDD* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01569 302 MobiDBLite consensus disorder prediction 1 58 - -
Lapu6g01569 302 Pfam Core histone H2A/H2B/H3/H4 79 173 IPR007125 GO:0003677
Lapu6g01569 302 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 69 205 - -
Lapu6g01569 302 MobiDBLite consensus disorder prediction 34 56 - -
Lapu6g01569 302 Gene3D Histone, subunit A 73 189 IPR009072 GO:0046982
Lapu6g01569 302 FunFam Nuclear transcription factor Y subunit gamma 76 190 - -
Lapu6g01569 302 SUPERFAMILY Histone-fold 61 182 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01569 Lapu-Chr6 15535146 15536328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01569 89 226 CCAAT-HAP5 Transcription Factor Family AT1G56170 50.355 1.30e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu6g01569 CBFD_NFYB_HMF 1.4e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01569 K08066 - vum:124832126 318.546