Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01561 ATGGGTATCTCATGGAGTGGCCGAAGAAGAAACAATTACATCCAAAACCCACCGCCTCCACTCCCGCCTCCCCCTTACTATTACCCTCCCCAATCACACCACCCTCCCCTTCCGCCGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTATGCCCCGCACAGTAACAACCATGCCGCTCCTCCTCCCTTGGCTCCACTTCCACCGCCGCCGCCGCCGCCGCAGACTAATTCCATCTCCTTCTATTACCCCAACCAGAGTGCCTATCCCTACTACGCCAATTCCGCGTCCAATCGCCTTCACTACCAACCTTCCTACCACCCTCAGCCTAGCGCATGGCCTGCCGCCACTCGCTCCTCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGGCCGCGAAAAAGATAAAAAATTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCTGATCATCATCTCATTTCCTTTGTTTTCGATGCTGTCTACGATGGAAGCATTACTGTCTCCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCATTTCAGCCCGTCAGAATACCCTTTCAGAAAGGAGTTGGCCAGACATTTTCTCAGCCTTCAGGAACAGGAATTGACCTAGGTTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACAAGTTTGGAAACACCCTCAGAAGATGAAACTCCGGGTGATTCCATGGTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAGTTAATGATGGTGGTTCTTTCCTGATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGCAAGCTCATCCGCCGCTGATTTTGATGACAATGATCCCGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGAGTGTGCAAAAGCTCTGCGACTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAAGTAAACAATGGCAATCAATGA 1146 0.4825 MGISWSGRRRNNYIQNPPPPLPPPPYYYPPQSHHPPLPPPPQGYFLPSTTTYAPHSNNHAAPPPLAPLPPPPPPPQTNSISFYYPNQSAYPYYANSASNRLHYQPSYHPQPSAWPAATRSSASTPPPYVDHQAAKKIKNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVSYFAKEEEKCRFVPLFPDAFQPVRIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLETPSEDETPGDSMVDASPHMQITQAVLEKVNDGGSFLIKVVRQILWIDGVRYELRELYGIASSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGECAKALRLQSNKCPICRQSIEELIEIKVNNGNQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01561 381 CDD mRING-HC-C3HC5_MGRN1-like 324 365 IPR045195 -
Lapu6g01561 381 MobiDBLite consensus disorder prediction 15 45 - -
Lapu6g01561 381 ProSiteProfiles Zinc finger RING-type profile. 326 365 IPR001841 -
Lapu6g01561 381 PANTHER MAHOGUNIN 83 377 IPR045194 GO:0061630
Lapu6g01561 381 FunFam probable E3 ubiquitin-protein ligase LOG2 310 375 - -
Lapu6g01561 381 SUPERFAMILY RING/U-box 318 371 - -
Lapu6g01561 381 MobiDBLite consensus disorder prediction 1 80 - -
Lapu6g01561 381 SMART ring_2 326 364 IPR001841 -
Lapu6g01561 381 MobiDBLite consensus disorder prediction 60 79 - -
Lapu6g01561 381 Pfam Zinc finger, C3HC4 type (RING finger) 324 370 - -
Lapu6g01561 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 375 IPR013083 -
Lapu6g01561 381 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01561 Lapu-Chr6 15421092 15424953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01561 128 381 C3H Transcription Factor Family AT3G06140 62.745 3.39e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01561 - - vra:106775674 636.336