Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01555 ATGAAGATCTCAATATCAGTCTGTGCCTGCAAGCAAGAGCTGCCCCTAGTAGGTTTCCAAAAGGGACTAACGATGGAGTCGTTGTTTCATCATCGGAGTAAGGACAAGGTGGTAGTGATAATGGGGGCCACGGGTACCGGCAAGACGAAGTTGGCCATAGAAGTGGCAAAACACTTCCAACCAGCGGAGATAGTGAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACCGAAGAGGAGTGTGATGGGGTCCCACATCACCTGCTTGGCACTGTTGACCCTAATATAAATTTCAGTGCCAACGACTTCTGTCTCCACGCCACTTGCGCAATCGATTCCATTGTGGAAAGGAATGGCTTACCCATCATTGCTGGAGGCTCCAATTCTTATTTGGATGCGCTCGTGAATCACCACGCCGAGTTTAGGTTAAGGTACGAGTGCTGTTTCCTCTGGGTTGACGTCTCCCTCCCCGTGCTCCATTCCTCTCTTCAGGCACGAGCGGACCGCATGATCGACGCCGGTCAAGTCAACGAGGTTCGCGACTTCTTCGACCCTCGCGCCGATTACACCAGAGGGATCCGAAGGGCCATTGGGGTGCCCGAATTCGACGACTTCCTACGCGCTGAAGCTTCAGGAACCGAGGACGAGACAACCAGAAAGAGGCTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAGAAGATTCACCGCCTCCACGGGTTGTGGAAACGGAGCATGCACCGCCTCGACGCCACTGAGGTTTTCCTCGGCTCCCGCGATGCCTGGCACGACCACGTGCTCGCCAAGAGCTTGCTCATCCTTCACAAGTTCCTTTACGGGGAAAAGAAAACGCACGTCCCCGCCGGAATCGTGTCCCCTAAAGACGTAATTGCGGCTGTTTCTGCGCCGTCGGTAGCAATGGCAGCAACCCATTAG 987 0.5441 MKISISVCACKQELPLVGFQKGLTMESLFHHRSKDKVVVIMGATGTGKTKLAIEVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECDGVPHHLLGTVDPNINFSANDFCLHATCAIDSIVERNGLPIIAGGSNSYLDALVNHHAEFRLRYECCFLWVDVSLPVLHSSLQARADRMIDAGQVNEVRDFFDPRADYTRGIRRAIGVPEFDDFLRAEASGTEDETTRKRLLEAAIARIKINNCTLANRQIQKIHRLHGLWKRSMHRLDATEVFLGSRDAWHDHVLAKSLLILHKFLYGEKKTHVPAGIVSPKDVIAAVSAPSVAMAATH* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01555 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Lapu6g01555 328 Gene3D - 34 295 IPR027417 -
Lapu6g01555 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 263 - -
Lapu6g01555 328 Pfam IPP transferase 71 145 - -
Lapu6g01555 328 Pfam IPP transferase 149 250 - -
Lapu6g01555 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 294 IPR039657 -
Lapu6g01555 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01555 Lapu-Chr6 15361580 15363649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01555 151 301 C2H2 Transcription Factor Family AT2G27760 33.333 9.95e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01555 K10760 - gmx:100812928 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01555 6 15361580 15363649 Lapu6g01555 6 15361580 15363649 ECH
Lapu3g00175 3 1961070 1962294 Lapu6g01555 6 15361580 15363649 PCT