Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01546 ATGGGACTCTGGGGTTTTAGAGTTTTGAAAATGGAAATGACAATGGTGAGGGTCAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGGAAGCGCCAGGTCATGGTTAGGCCATCCTCAAAAGTGATTATAAAATTCCTTTTGGTGATGCAAAAGCATGGGTACATTGGAGAGTTTGAGTACGTTGACGATCACAGAGCTGGGAAAATTGTTGTTGAATTGAATGGTAGACTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATGTGGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGTTGCTCCCCTCAAGACAGTTTGGGTATATTGTGTTGACTACCTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGGAAGAATGTTGGTGGGAAAGTGCTGGGTTTCTTTTACTAG 435 0.4414 MGLWGFRVLKMEMTMVRVSVLNDALKSMYNAEKRGKRQVMVRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01546 144 Gene3D - 84 144 - -
Lapu6g01546 144 Gene3D - 15 83 - -
Lapu6g01546 144 Hamap 30S ribosomal protein S8 [rpsH]. 16 144 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lapu6g01546 144 ProSitePatterns Ribosomal protein S8 signature. 114 131 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lapu6g01546 144 FunFam 40S ribosomal protein S15a 15 83 - -
Lapu6g01546 144 Pfam Ribosomal protein S8 21 144 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lapu6g01546 144 SUPERFAMILY Ribosomal protein S8 18 144 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lapu6g01546 144 PANTHER 40S RIBOSOMAL PROTEIN S15A 15 143 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lapu6g01546 144 FunFam 40S ribosomal protein S15a 84 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01546 Lapu-Chr6 15246093 15247422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01546 15 144 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.923 4.63e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01546 K02957 - tcc:18586706 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00186 3 2050692 2053419 Lapu6g01546 6 15246093 15247422 PCT