Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01543 ATGGCTTCCATTGCTATCAGAAACCTATATTCTAAGCGTCTTCTTTACTCTTTGCATCTCACAAATGCTTTCCATTCATTCTCTTGTGGCACCATATACCAAAACTACAATGCATCTCCATTGGATTTTGTTTCTTTACGGAGATCCATGGCCACCTTCACCCGAACAAAGCCCCATCTTAACGTTGGAACAATAGGGCATGTTGATCATGGGAAAACTACACTTACTGCTGCAATTACCAAGGTGCTAGCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAAATAGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACTATTGCTACTGCTCATGTAGAGTACGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGTGCTGCACAAATGGATGGTGGAATTCTTGTGGTTTCTGCTCCGGATGGGCCAATGCCTCAAACAAAGGAACATATACTGCTTGCTCGGCAGGTTGGCGTGCCATCATTAGTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGATCCAGAGTTGCTTGAACTAGTGGAAATGGAGCTTCGTGAACTGCTTAATTTCTACAAATTTCCTGGGGATGACATTCCAATTGTGCGAGGTTCTGCCCTCTCTGCTTTACAGGGGACTAATGAAGAACTTGGAAAGAAGGCAATCTTAAAACTAATGGATGCTGTGGATGAATACATTTCGGATCCTGTGAGGAAACTTGACAAGCCTTTCTTAATGCCAATAGAAGACGTTTTCTCAATTCAGGGTCGTGGAACCGTTGTGACGGGTCGTGTTGAACAAGGCACCATCAAAGTAGGAGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTCTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGTGGTCTGAAGCGCGATGATGTACAGCGAGGAATGGTCGTGACCAAGCCTGGTGCTTTGAAGACGTATAAGAAGTTCGAAGCAGAAATTTATGTGCTCTCTAAAGATGAAGGCGGCCGTCATACAGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACCTGAGGACAGCAGATATTACTGGAAAGGTGGAATTACCCGAAAATGTTAAGATGGTTATGCCTGGTGATAATGTGGCTGCAACTTTTGAGCTGATATCACCTGTTCCTCTTGAAATAGGTAGGTAG 1275 0.4384 MASIAIRNLYSKRLLYSLHLTNAFHSFSCGTIYQNYNASPLDFVSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRKLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGKVELPENVKMVMPGDNVAATFELISPVPLEIGR* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01543 424 Hamap Elongation factor Tu [tuf]. 48 424 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lapu6g01543 424 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 57 253 IPR000795 GO:0003924|GO:0005525
Lapu6g01543 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 275 IPR027417 -
Lapu6g01543 424 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 98 113 IPR031157 -
Lapu6g01543 424 NCBIfam elongation factor Tu 49 423 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lapu6g01543 424 FunFam Elongation factor Tu 48 252 - -
Lapu6g01543 424 Pfam Elongation factor Tu C-terminal domain 350 422 IPR004160 -
Lapu6g01543 424 NCBIfam small GTP-binding protein domain 61 197 IPR005225 GO:0005525
Lapu6g01543 424 Gene3D Translation factors 255 385 - -
Lapu6g01543 424 Pfam Elongation factor Tu domain 2 274 345 IPR004161 GO:0005525
Lapu6g01543 424 SUPERFAMILY Translation proteins 254 350 IPR009000 -
Lapu6g01543 424 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Lapu6g01543 424 PRINTS GTP-binding elongation factor signature 105 113 IPR000795 GO:0003924|GO:0005525
Lapu6g01543 424 PRINTS GTP-binding elongation factor signature 61 74 IPR000795 GO:0003924|GO:0005525
Lapu6g01543 424 PRINTS GTP-binding elongation factor signature 141 152 IPR000795 GO:0003924|GO:0005525
Lapu6g01543 424 PRINTS GTP-binding elongation factor signature 125 135 IPR000795 GO:0003924|GO:0005525
Lapu6g01543 424 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 354 423 IPR009001 -
Lapu6g01543 424 CDD EF_Tu 58 252 IPR041709 -
Lapu6g01543 424 Gene3D - 49 252 IPR027417 -
Lapu6g01543 424 CDD EFTU_III 351 423 - -
Lapu6g01543 424 Gene3D Translation factors 389 424 - -
Lapu6g01543 424 FunFam Elongation factor Tu 255 385 - -
Lapu6g01543 424 CDD EFTU_II 260 348 IPR033720 -
Lapu6g01543 424 PANTHER ELONGATION FACTOR TU-RELATED 51 423 - -
Lapu6g01543 424 Pfam Elongation factor Tu GTP binding domain 57 250 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01543 Lapu-Chr6 15217617 15220976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01543 55 364 Eukaryotic Initiation Factors Gene Family AT5G60390 33.333 8.30e-43 154