Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01518 ATGCAAGCTCCTCAACCATCACTCACTGATGAAGCTCCCGAGATTTCCCATCAGGCTGTCCCGCTGCGAAACAAAGAAGTTTCAGATAGTGGACCCAGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTATAGGGTTTGGGAGCACTAGTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTTAACAAAGGGATATCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGGGGATGGGGAAAGAAGCAGCCTACTCAGTTCAGACCCCAAGACAGCTGCAGACAGTTCTAATATGGCCTCTATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCTGCAAGGACATACAATGAACAAATTAAGCCACATAAAGATGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAGCAACAAGATCCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTATGCAGGATATGTTTTGATGTGTGTGATGAAAGGAACACCTTTAAAATGGAATGCAGTTGTAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCACAAAAGGGGACAAGAAATGTGATGTGTGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTACTTCGAGTGACAAGCTCAGTTCAACGACAGAACAGACAGATGCAAGGTCAGCAGAACCTACATCCAGAGTCAATAAGCGCTTGGCAAGACTTTGTGGTGCTTGTCCTCATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAGGCTATTATTATTGCAGCACCATTTGCCTTTACCTTGGGCCTGCTAGCTTCTATTTTTGCAGTCATCCTGGCAATTAAGGAGTATATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTGGCTTTAACTGTGCATCTATTTTATACAATGTTGCATTTGATGGCCATATATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGACCATCAACTACGCATATATCCAGTTTGTCACTTGGAGGCTTCAAGTCGCTCATGATGATAACCCTGTATGA 1269 0.4255 MQAPQPSLTDEAPEISHQAVPLRNKEVSDSGPSGRRPDISLQVPPRPIGFGSTSGGRVLDHSQSFNKGISSSRGFLRALSFKRKGNVGDGERSSLLSSDPKTAADSSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYNEQIKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDPNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKGDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRQMQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLMAIYAILLSSVLGFGIAMTINYAYIQFVTWRLQVAHDDNPV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01518 422 MobiDBLite consensus disorder prediction 91 107 - -
Lapu6g01518 422 ProSiteProfiles Zinc finger RING-type profile. 214 261 IPR001841 -
Lapu6g01518 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Lapu6g01518 422 PANTHER OS02G0165000 PROTEIN 60 417 - -
Lapu6g01518 422 MobiDBLite consensus disorder prediction 1 64 - -
Lapu6g01518 422 MobiDBLite consensus disorder prediction 86 107 - -
Lapu6g01518 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Lapu6g01518 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Lapu6g01518 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Lapu6g01518 422 SUPERFAMILY RING/U-box 210 264 - -
Lapu6g01518 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01518 Lapu-Chr6 14954401 14960502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01518 152 321 C3H Transcription Factor Family AT2G37950 26.630 1.14e-10 59.3