Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01515 ATGGAACCCCAACAATCTCTCCCTCCCATGGACGATTCCGAAGACCCTTCCTCCATTTGGGACTTCTCCTACCTCCTCGACTTCAACCTCGATGACGACCACACCAATAACTCTCTCCCTCTCTCTTCTCCCTTAAACGACGCTCCAGAGATCCCTAACGACCGGGTCCGAAAGCGTGACCCCCGACTCACCTGCTCCAACTTTCTCGCGGGTCGGGTCCCATGCGCATGCCCCGAACTCGATGCCAAGCTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCGCGCACCGCGCGTGCCTCCGCATCCGCTCGGTGCCAGGTCCCTGGCTGTGAGGTCGATATCTCCGAACTCAAAGGTTATCATCGCCGACACAGAGTCTGCCTCCGCTGCGCCAATGCCACCACCGTTGTCCTCCACGGCGAGCCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCACGTTTTGTCGGATTTCGACGAAGGGAAACGAAGTTGCAGAAGGAAGTTAGAGCGGCATAACACGCGAAGGCGGAGAAAGCCCCTTGTGGACTCCGGAAGTTCTGCTATCAGCGAACTTGAAGCTGTTACTCAGAATGAGGAAAACAATTATGATGTGGAAGCAGGAAAAGATTCTTCAAATTTGAGTAATGAGATCAACGACCTAGTAGTGTTGCCAGATCATGAAGATGAACCTGTTCCCATTCTGAGATCAGCTCCTGATGCCCAGAATGTTAATAGTGATACTGTTGTGTCTTTGGCTGTTTCGGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGTCTATACGTCTATGTGCCAAACAGGTCGGATTTCGTTTAAGCTTTATGATTGGAATCCAGCAGAATTTCCTAGAAGACTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTAGAGTTGGAGGGTTATATCCGACCCGGGTGCACGATTTTGACAAGTTTTATTGCAATGCCCAACATTATGTGGAAAAATTTACGGAAAGATTCTTTGGAATATGTGAACGATCTTGTTGCTCCTGGCAAGATGCTATCTGGAACAGGGACTGCACTAGTTCATCTGAATGACATAGTCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAAAGTCAAGGTAAACTTGCAGGCACCGAGGCTTCATTATGTTCATCCTACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACATATTGCAGCCTAAATTTCGGCTTCTTATATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCATCTCCACATAACTGGACTGAAGAAAATATTTCTTGTGCTTTTGACAATCAGTTGTACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCCGGCTTATCAAACTTTATTCCTGTACTTATTGGGGATAAAGAAATTTGTTCTGAAATGAAGACACTGCAGCAAAAATTATATTCATCTCACCTTTCTAAACAGTTCCGTTCTGCATCTGGTGGTTTAATCTGCAGCTCGTGTGAAACATTTACACGTAGTCACACATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACGGCTTCACAAATCCAAAGATATTGTCATTTGTTGGATTTTCTGATGTGCAATGAATCAACAATCATGTTGGAAAAAATATTACCAAATTTAATAATCTTAATAGATAGCATGAAATCCAATTTTTTGATTAATAGGACGAGTGATCTTGATACAAGGCAACTCCTGAAGCACATACGTAATGCTCAAATTGCCATATATCAGAAACATCAGAAAAATGGAAGTATAATTGTGCACCCTGAAATGGAAGGCTTTAAACTTGCTCAGGGCTGCTCCCAAGATAACAAGATCTCAGTTGCAATTAACAGTCAGGGTATCCTGTCAAAAGCAGATGCAAGGTGGGGAGTACTGAAAAATCTAACTTCTAATGACAAAATTGAAAGAATACCTCTTTTGAAGAGAGATATTATACTGAACGTGGAAGAGTTGCCTGGAAGATATGGTCGTCGATGTTTAGGCAGGGGGTTCTTGACCTCTCGACCAGCTCTTTTTGTGATTGTTTCGATTGCTGTTTGTCTTGGGGTTTGTGTAGCCGTCCTTCATCCTGGAAGGGTTACTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG 2295 0.4405 MEPQQSLPPMDDSEDPSSIWDFSYLLDFNLDDDHTNNSLPLSSPLNDAPEIPNDRVRKRDPRLTCSNFLAGRVPCACPELDAKLEDEGLPGKKRARTARASASARCQVPGCEVDISELKGYHRRHRVCLRCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVDSGSSAISELEAVTQNEENNYDVEAGKDSSNLSNEINDLVVLPDHEDEPVPILRSAPDAQNVNSDTVVSLAVSGETRVNSGNTSNSPSYCDNKSVYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPNIMWKNLRKDSLEYVNDLVAPGKMLSGTGTALVHLNDIVFRVMKDGTSVTKVKVNLQAPRLHYVHPTCFEAGKPMEFVACGSNILQPKFRLLISFSGKYLKCEYCVPSPHNWTEENISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICSEMKTLQQKLYSSHLSKQFRSASGGLICSSCETFTRSHTSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLMCNESTIMLEKILPNLIILIDSMKSNFLINRTSDLDTRQLLKHIRNAQIAIYQKHQKNGSIIVHPEMEGFKLAQGCSQDNKISVAINSQGILSKADARWGVLKNLTSNDKIERIPLLKRDIILNVEELPGRYGRRCLGRGFLTSRPALFVIVSIAVCLGVCVAVLHPGRVTELAVSVRRCLFNY* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01515 764 MobiDBLite consensus disorder prediction 37 57 - -
Lapu6g01515 764 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Lapu6g01515 764 Pfam SBP domain 106 180 IPR004333 GO:0003677
Lapu6g01515 764 Gene3D - 101 167 IPR036893 GO:0003677|GO:0005634
Lapu6g01515 764 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 582 IPR044817 GO:0003677
Lapu6g01515 764 MobiDBLite consensus disorder prediction 171 190 - -
Lapu6g01515 764 MobiDBLite consensus disorder prediction 195 214 - -
Lapu6g01515 764 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01515 Lapu-Chr6 14907063 14915762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01515 8 758 SBP-box Gene Family AT5G18830 46.701 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu6g01515 SBP 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01515 - - gmx:100776034 1293.49