Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01496 ATGGGCATAATCAGAAGCATGAGATCGAGGTCGCATCGCGTGGTGCAGGAGCAAGAAGAGTGTGTTGGTGACAGCATGAGACAGAGTTGTTGGGCTAACATGCCCCAAGAGCTTCTCCGAGAGGTTCTCCTCCGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGCGTCGTCGCCTGCGCCGGCGTGTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAACTTTCCTCAAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTCCGGTGCTTTATAAAGCGCAACCGGTCCACCCAAACGTACTATTTGTTTCTCAGTTTAACCAATACGCTAGCTGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCAACGTGCACAGATTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTACGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCTCCTCATTCAGGGGCAAGGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCGCCTAAGGTCCCTACTGGCAACTATCCAGTGGCCCACATCTCATACGAATTGAATGTGCTAGGCTCCCGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCTATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCCCCTACACAGACCGAATTTTCTCTTAACAACATAGATATGTTTCCTTCGTTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACTCCATGTCTGGACCCCTGGTTGATCAAAAGGATGGGATGCTCGTGTTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTCCAGTGTTGGTGCTTAAACTTTCATGGTCGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAATGGACCTGCTGGGCCAGAGCATGATAAGATAATCCTTCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATTTCGGCATTTCAGGCCTTTGCTATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1152 0.4809 MGIIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTNTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENSMSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01496 383 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Lapu6g01496 383 Gene3D Tubby Protein; Chain A 91 377 IPR025659 -
Lapu6g01496 383 FunFam Tubby-like F-box protein 88 383 - -
Lapu6g01496 383 Gene3D - 24 84 - -
Lapu6g01496 383 Pfam F-box domain 31 78 IPR001810 GO:0005515
Lapu6g01496 383 CDD F-box_AtTLP-like 31 75 - -
Lapu6g01496 383 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Lapu6g01496 383 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Lapu6g01496 383 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Lapu6g01496 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Lapu6g01496 383 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Lapu6g01496 383 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Lapu6g01496 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Lapu6g01496 383 SUPERFAMILY Tubby C-terminal domain-like 80 383 IPR025659 -
Lapu6g01496 383 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Lapu6g01496 383 Pfam Tub family 92 378 IPR000007 -
Lapu6g01496 383 PANTHER TUBBY-RELATED 16 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01496 Lapu-Chr6 14749337 14754799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01496 8 383 TUB Transcription Factor Family AT2G47900 72.823 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu6g01496 Tub 7.2e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01496 K19600 - gmx:100778346 750.355