Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01493 ATGGGGTGTGCGTTTGGGAGAGAGTCTTCGAGGGAGGAGAGGAGAGAGGAAGTGAGAGAGGCAAAAGCTGAGGTGGGTGGAGCAGAGGTTGTTGAGAATGAGAACATTGAGAAGGAGAAGGAGGGTGGAAGAGAGGAGAAGAGGACAAGGGCAAGGGGAGAGAGGAGGCGATCTTCGAAGCCGAAGCCGAATCCGAGGTTGAGCAATCCTCCTAACCATGTTCATGGTGAGCAGGTTGCGGCAGGGTGGCCCTCTTGGCTCTCTAAGGTTGCTGGTGAAGCCATCAACGGATTGACGCCTCGGAGAGCTGACACCTTTGAGAAGCTTGATAAGATCGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATTCTTTGACGGGAAAAATTGTTGCTCTAAAGAAGGTCCGTTTTGACAATTTAGAGCCTGAAAGTGTGAAGTTCATGGCTAGGGAGATTTTGATTCTCCGTCGTCTAGATCATCCCAATGTCATCAAACTAGAAGGCTTAGTGACATCTAGAATGTCGTGCAGTTTATATCTTGTGTTTGAATACATGGTGCATGATCTGGCTGGACTTGCCACAAACCCGGCAATTAAGTTCACAGAATCTCAGGTGAAATGTTACATGCATCAGCTATTTTCTGGACTGGAGCACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGATAATGACGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTATGATCCTAATCACAAGCATCCTATGACTAGTAGAGTGGTTACATTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGAGTACAGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACTGAGGTGGAACAACTACACAAAATATTTAAACTATGCGGTTCTCCTTCTGACGAATATTGGAAAAAATCAAAGTTGCCACATGCTACCATTTTTAAGCCCCAGCAGTCATACAAACGATGTATTGGGGAGACATTTAAAGATTTTCCTCCATCATCCCTGCCACTTATTGACACCCTTCTCTCAATTGATCCAGATGAACGTTTGACTGCCACTGCTGCATTACATAGTGAATTCTTTACAACAAAACCATATGCCTGTGACCCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGGGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGCGGGGAATTCCAGTGCCAGAGGCCAATGCTGAACTGCAAGCAAATATTGATAGACGGCGGCTGATCACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAGCTCTAGGCTATCCACTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTCTCACAACCTAAAGCAAATATCCAAACATGGTCCGGCCCATTGGTAGATCCTTCTGGTGTGGGCGCACCGAGGAGAAAGAAGAAACATGGAAAGTGA 1635 0.463 MGCAFGRESSREERREEVREAKAEVGGAEVVENENIEKEKEGGREEKRTRARGERRRSSKPKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILRIADFGLASFYDPNHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIGETFKDFPPSSLPLIDTLLSIDPDERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRERVGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNFSQPKANIQTWSGPLVDPSGVGAPRRKKKHGK* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01493 544 FunFam probable serine/threonine-protein kinase At1g54610 93 188 - -
Lapu6g01493 544 SMART serkin_6 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01493 544 MobiDBLite consensus disorder prediction 507 526 - -
Lapu6g01493 544 PANTHER CELL DIVISION PROTEIN KINASE 104 394 - -
Lapu6g01493 544 MobiDBLite consensus disorder prediction 7 52 - -
Lapu6g01493 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Lapu6g01493 544 MobiDBLite consensus disorder prediction 471 544 - -
Lapu6g01493 544 FunFam probable serine/threonine-protein kinase At1g54610 189 430 - -
Lapu6g01493 544 Gene3D Transferase(Phosphotransferase) domain 1 189 429 - -
Lapu6g01493 544 CDD STKc_CDK9_like 106 390 - -
Lapu6g01493 544 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Lapu6g01493 544 Pfam Protein kinase domain 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01493 544 ProSiteProfiles Protein kinase domain profile. 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01493 544 MobiDBLite consensus disorder prediction 1 77 - -
Lapu6g01493 544 Gene3D Phosphorylase Kinase; domain 1 94 188 - -
Lapu6g01493 544 MobiDBLite consensus disorder prediction 425 445 - -
Lapu6g01493 544 SUPERFAMILY Protein kinase-like (PK-like) 101 396 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01493 Lapu-Chr6 14732019 14736690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01493 101 428 Core Cell Cycle Gene Families AT5G10270 51.163 9.16e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu6g01493 Pkinase 9.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01493 K08819 - gmx:100779413 956.822