Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01485 ATGGCGAGACCTTCCAAGCCTCACTCATCTTCCGACGAAGCACTCTCCAATGCTTCGAGTTCGTCCGAGGAAAAGGAGCAGGTCAACGAACAGATCAACGAAGAGGAAGATGAGGAGGAGCTCGAGGCGGTGGCCCGCTCCGCCAGTTCCGACGACGATGATGACGAAGGTGCCGCCGGTAATCCTCCGGATTCCGACGAAGATGGCGCCGCCGAAGATGACGACCAGGATGAGGATAATGTTGATCCCGCAATTGGCAAGCGAGAGAAGGCTAGATTAAAGGAAATGCAGAAAATGAAGAAACAGAAGATCCAGGAGATACTGGATGCACAAAATGCGGCCATAGATGCTGACATTAACAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCAAACTTCTTCTCAGAAGTCAAAGGGAAGGGGACGCCATGCATCAAAAGTGACTGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTGTAGCCAACACACGTCTGGTGACACAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTGAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGACTTGGTAAAACATTACAAACCATATCTTTATTGGGTTATTTGCACGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGACGCTTTTGTCCTGTTCTTCGAGCAATCAAGTTTCTTGGCAATCCCGATGAAAGGAGACATATAAGAGAGGAACTTCTGGTTGCTGGGAAGTTTGATGTCTGCGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCATTACGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTACTATCCAAAACAATGAGACTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAAGTTGTTCAACAATTACACAAGGTCCTTCGGCCATTTCTCCTTCGAAGATTGAAATCAGATGTTGAGAAAGGATTGCCACCTAAAAAGGAAACTATTCTTAAAGTAGGCATGTCTCAAATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAACGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTTCAAGGTGCTGAACCTGGTCCTCCTTACACAACAGGAGATCATCTCATTACAAGTGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCTCAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGTATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTATTATCTACTCGTGCTGGAGGTCTTGGAATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGTACTGAGTATACAATTGAAGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTCGCACTTGATGCTTTGGTGATTCAGCAAGGGAGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGACGAGAACAGAGTTGATATTAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCGAAAAGGGAGCGAAAGCGCAACTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCCCGCATTCCTAGGATGCCTCAGTTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTGCGCTATCTCATGCAAACACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACCGCTGAAGAGTTAGAGGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCTTGGAGCCGGAGGGACTTTAATACTTTCATTAGGGCCTGTGAAAAATATGGTAGAAATGATATTAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGACGAAGTTGAAAGATATGCCAAGGTCTTTAAAGAAAGATACAAGGAATTAAATGATTATGACAGGATTATTAAAAACATTGAAAGAGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTGGAGTTAAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACTTCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAACTGGCAAGGAGGTGTGACACCCTCATTCGTCTGGTAGAAAAGGAAAACCAAGAATATGACGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAAAACACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCACCATTGAAGAAGCGGAAGCAGTTAACCATGGATGATTATGCAAGCACGGGGAAGAGAAGAAAATAA 3204 0.4201 MARPSKPHSSSDEALSNASSSSEEKEQVNEQINEEEDEEELEAVARSASSDDDDDEGAAGNPPDSDEDGAAEDDDQDEDNVDPAIGKREKARLKEMQKMKKQKIQEILDAQNAAIDADINNRGKGRLKYLLQQTELFAHFAKGDQTSSQKSKGRGRHASKVTEEEEDEEYLKEEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRVDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEDEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNTPSKRALARQTESPPLKKRKQLTMDDYASTGKRRK* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01485 1067 Coils Coil 93 113 - -
Lapu6g01485 1067 CDD SF2_C_SNF 495 620 - -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 753 774 - -
Lapu6g01485 1067 Coils Coil 15 42 - -
Lapu6g01485 1067 Gene3D - 415 707 IPR027417 -
Lapu6g01485 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 415 707 - -
Lapu6g01485 1067 Gene3D - 933 1036 - -
Lapu6g01485 1067 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Lapu6g01485 1067 FunFam Chromatin-remodeling complex ATPase 195 410 - -
Lapu6g01485 1067 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Lapu6g01485 1067 SMART sant 845 894 IPR001005 -
Lapu6g01485 1067 SMART sant 947 1008 IPR001005 -
Lapu6g01485 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 746 844 - -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 1 97 - -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 142 174 - -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 1016 1067 - -
Lapu6g01485 1067 Pfam HAND 758 840 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lapu6g01485 1067 Gene3D - 195 410 IPR038718 -
Lapu6g01485 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Lapu6g01485 1067 ProSiteProfiles SANT domain profile. 844 896 IPR017884 -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 9 26 - -
Lapu6g01485 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 845 899 - -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 1016 1033 - -
Lapu6g01485 1067 Pfam SLIDE 902 1012 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lapu6g01485 1067 SMART ultradead3 190 382 IPR014001 -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 81 97 - -
Lapu6g01485 1067 SUPERFAMILY Homeodomain-like 900 1022 IPR009057 -
Lapu6g01485 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 409 IPR027417 -
Lapu6g01485 1067 SMART helicmild6 525 609 IPR001650 -
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 54 80 - -
Lapu6g01485 1067 CDD SANT 848 892 IPR001005 -
Lapu6g01485 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 692 IPR027417 -
Lapu6g01485 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 757 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lapu6g01485 1067 Coils Coil 1002 1033 - -
Lapu6g01485 1067 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 98 1054 - -
Lapu6g01485 1067 Gene3D ISWI, HAND domain 746 844 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lapu6g01485 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Lapu6g01485 1067 SUPERFAMILY Homeodomain-like 848 898 IPR009057 -
Lapu6g01485 1067 Gene3D iswi atpase 900 932 - -
Lapu6g01485 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 933 1036 - -
Lapu6g01485 1067 Gene3D - 845 899 - -
Lapu6g01485 1067 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Lapu6g01485 1067 MobiDBLite consensus disorder prediction 1043 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01485 Lapu-Chr6 14680645 14691367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01485 215 636 RAD5 or RAD16-like Gene Family AT1G02670 27.723 1.12e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu6g01485 SNF2_N 8.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01485 K11654 - gmx:100809750 1921.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01485 6 14680645 14691367 Lapu6g01485 6 14680645 14691367 ECH
Lapu3g00231 3 2421880 2431419 Lapu6g01485 6 14680645 14691367 PCT