LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu6g01484	ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTGGGGTGAGGGTCAAGGAGGTGCCCAACAAGGATTCTTCTTTTAAGGAAGCTGCTTCTCATGTTCCTCAGTCTCATCACCCCAGCAGGGCAAACACAGATAAATCGAAATCATCGCGAAGTGGCGCAGATGCTAAGAAGGAAACACCGGTTTCGAAGGATGGCCCAACAGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGTGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGCCTTGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTAGATCGAAATGGTCTCCAAGGAAATCGAGAATTTTTGGTGGAAGTTCTCATGCTTAGCCTCTTACATCATCCCAATCTTGTGAACTTAATTGGTTATTGTGCAGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGGTCTTTGGAGGATCATTTACACGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAAATAGCGGCTGGAGCTGCAAAGGGATTGGAATACTTGCATGACAAGGCAAATCCGCCAGTGATATATAGAGACTTAAAATCATCCAACATCCTCCTAGACGAGGGTTATCATCCCAAGTTATCAGATTTTGGTCTGGCGAAACTTGGTCCAGTTGGCGACAAGACTCATGTATCCACACGAGTAATGGGAACATACGGCTATTGTGCCCCTGAATATGCTATGACTGGTCAACTAACTCTGAAATCTGATGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATCACTGGGCGCAAGGCTATTGACAACACGCGTGCACACGGAGAGCACAATCTTGTTGCATGGGCGCGGCCTCTCTTCAAGGACCGAAGGAAGTTCCCCAAAATGGCTGACCCTCTACTTCAAGGCCGATATCCGATGAGAGGACTGTATCAAGCACTTGCAGTTGCTGCAATGTGTCTGCAGGAGCAAGCTGCTACAAGGCCTCTGATTGGGGATGTGGTGACTGCTCTCACATATCTGGCCTCACAGACATATGATCCAAATGCAGCCAATCAATCCAACAGGGTTGGCCCATCAACCCCTAGGATGAGGGATGACAGAAGGAGCCTGGCAGACGGTGTGGACAGCCCTGACCGGCGCCTTGGCTCCCCTTCCACCCACCGAAACTCCCCTGACTTCAGGAAGAGAGACAGCAGGGATCCAGGCAGTGGGACCGAGTTAGGCAGGATGGACACTGGTGGTGGTTCAGGGAGGAAATGGGGGTTGGATGATTATGAAAGGCAGGAGTCTCAGAGAGACAGCCCTGTAAATACTGCAAGAGCCAGAGAGACTCCATGGAACCGCGACCTGGACCGAGAGCGTGCGGTGGCCGAAGCAAAAGTTTGGGGCGAGAATTGGAGAGAGAAGAAGAAAGCAAATGCCATGGGTAGCTTCGATGCTACAAATGACTAA	1542	0.4916	MGGCFPCFGSSNKEDSGGVRVKEVPNKDSSFKEAASHVPQSHHPSRANTDKSKSSRSGADAKKETPVSKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANQSNRVGPSTPRMRDDRRSLADGVDSPDRRLGSPSTHRNSPDFRKRDSRDPGSGTELGRMDTGGGSGRKWGLDDYERQESQRDSPVNTARARETPWNRDLDRERAVAEAKVWGENWREKKKANAMGSFDATND*	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu6g01484	513	SMART	serkin_6	93	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01484	513	FunFam	Serine/threonine-protein kinase PBS1	66	169	-	-
	Lapu6g01484	513	MobiDBLite	consensus disorder prediction	1	73	-	-
	Lapu6g01484	513	Gene3D	Phosphorylase Kinase; domain 1	64	169	-	-
	Lapu6g01484	513	MobiDBLite	consensus disorder prediction	419	434	-	-
	Lapu6g01484	513	Pfam	Protein kinase domain	98	307	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01484	513	Gene3D	Transferase(Phosphotransferase) domain 1	170	387	-	-
	Lapu6g01484	513	PANTHER	OS07G0668900 PROTEIN	4	379	-	-
	Lapu6g01484	513	CDD	STKc_IRAK	99	368	-	-
	Lapu6g01484	513	SUPERFAMILY	Protein kinase-like (PK-like)	75	367	IPR011009	-
	Lapu6g01484	513	FunFam	Serine/threonine-protein kinase PBS1	170	385	-	-
	Lapu6g01484	513	MobiDBLite	consensus disorder prediction	16	30	-	-
	Lapu6g01484	513	ProSiteProfiles	Protein kinase domain profile.	93	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01484	513	MobiDBLite	consensus disorder prediction	390	405	-	-
	Lapu6g01484	513	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	216	228	IPR008271	GO:0004672\|GO:0006468
	Lapu6g01484	513	MobiDBLite	consensus disorder prediction	44	69	-	-
	Lapu6g01484	513	MobiDBLite	consensus disorder prediction	377	480	-	-
	Lapu6g01484	513	ProSitePatterns	Protein kinases ATP-binding region signature.	99	122	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu6g01484	Lapu-Chr6	14669616	14678644	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu6g01484	4	372	Glycoside Hydrolase	AT3G07070	65.416	1.09e-171	489

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Lapu6g01484		Pkinase	5.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu6g01484	-		-	gmx:100814575	1002.66