Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01477 ATGGAGCAGTACGGCCGGTCCAGCGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGCCTTGAAGAGCCTATGTGGCAATTGGGAATGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCGATCAGGCTGATTGCACTTACTACTTGAGGACCGGCTTCTGTGGCTTCGGTTCGCGGTGTCGGTTCAATCACCCTCGTGACCGTGGCACGGTTGTTGGAGCTGAGAGGACTGTGGCGGACTATCCGGAACGAGTTGGTCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACGTGCAAGTTTGGTTCGTCTTGCAAGTACCACCACCCGAGGCAGGCAGGAGGTGCTGCTACCCCTGTGTCGCTAAACTATTATGGATATCCATTGCGTCCGGGTGAGAAGGAGTGTTCATATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCGGTTCCTGCTGGCGTCCAAATTCCAGCACCATCACCAGTTGCTCCAGTTTCGCCTTTGCCTGTGCCTTCACCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCATCGCAGCAAATTGGTGTGCTTGTTGCAAGGCCTCCTCTGCTGCCAGGTTCATTAGTCCAGAGTCCCTATGGACCTGTGGTACTATCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTGTACTTCCTTCTGGTACTCCTAATGTTGGTTCAGCACAGCTCTATGGGATAACACAACTACCTTCATCAGCGGCTGCCTATCCTGGACCTTATCAACTTCCTGGTTCCGTAGTTGGTCCTTCAAGCAGTAATCAGAAGGAGCAGGCATTTCCAGAGAGGTCTAATCAACAAGATTATCAGTATTATCCGAAAACAGGGGAGGTCAAAGTCGGTCCATCATATAGGTATCACCCTCCGCCAGAAATGTCTGCACCAAAAGCAAATGTTACTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCGTCACCTTGCACTCATTATGCGCAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCAACAATTGGTACTCTTGCTCCATCATCTTCATCCTCAGAGTTGCGACTGGAACTTTCCTCGGGATCCAGCAAGGAGTCTGTTCCATCGAGAATGTCTTCATCATCAGGAATGTTGACCGGGTCAATTGGCTTGACTTTATCTACCGGTGGACCCGTTTCTCAATCAAACAGTCTATCTGCTCAAAGTTTGGATCCATTAGCCACTGCCACTAGTACCACAACTAGCAATGTCTCTCACACCTCAAGCTAA 1443 0.51 MEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGMGAAEESYPQRPDQADCTYYLRTGFCGFGSRCRFNHPRDRGTVVGAERTVADYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRQAGGAATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPSPLYSTMQPPPGPSSQQIGVLVARPPLLPGSLVQSPYGPVVLSPAMVPISGWGPYQASGTGAVLPSGTPNVGSAQLYGITQLPSSAAAYPGPYQLPGSVVGPSSSNQKEQAFPERSNQQDYQYYPKTGEVKVGPSYRYHPPPEMSAPKANVTLSPAGLPLRPGASPCTHYAQHGVCKFGSACKFDHSMGSLSYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRLELSSGSSKESVPSRMSSSSGMLTGSIGLTLSTGGPVSQSNSLSAQSLDPLATATSTTTSNVSHTSS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01477 480 Gene3D - 45 121 - -
Lapu6g01477 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Lapu6g01477 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Lapu6g01477 480 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Lapu6g01477 480 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Lapu6g01477 480 Gene3D - 122 171 - -
Lapu6g01477 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Lapu6g01477 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Lapu6g01477 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Lapu6g01477 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 374 IPR000571 GO:0046872
Lapu6g01477 480 SUPERFAMILY CCCH zinc finger 350 377 IPR036855 GO:0046872
Lapu6g01477 480 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Lapu6g01477 480 MobiDBLite consensus disorder prediction 403 480 - -
Lapu6g01477 480 PANTHER PROTEIN PHOSPHATASE RELATED 30 409 - -
Lapu6g01477 480 MobiDBLite consensus disorder prediction 1 31 - -
Lapu6g01477 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Lapu6g01477 480 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Lapu6g01477 480 SUPERFAMILY CCCH zinc finger 94 120 IPR036855 GO:0046872
Lapu6g01477 480 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Lapu6g01477 480 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Lapu6g01477 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01477 Lapu-Chr6 14591298 14602376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01477 1 449 C2H2 Transcription Factor Family AT5G18550 56.061 2.66e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu6g01477 zf-CCCH 9.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01477 - - gmx:100812433 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01477 6 14591298 14602376 Lapu6g01477 6 14591298 14602376 ECH
Lapu3g00240 3 2504687 2509578 Lapu6g01477 6 14591298 14602376 PCT