Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01441 ATGGGGGATTTAGAGAGAATGGGGAGAGAACTCAAATGTCCAATCTGTTGGAGTTTGTTCGATTCTGCGGTTTCGCTTACATGCAATCATATTTTCTGCAACTCGTGTATTGTGAAGTCCATGAAATCGGCCTCTGCTTGTCCTGTCTGTAAAATCCCGTTCACTCGTCGAGAGGTTCGCCCTGCTCGTCACATGGACAACTTGGTCAATATATATAAAAACATGGAAATTGCTTCAGGAATGAATTTATTTGTCACCCAGAATGTACCTCATAATGTGGAAAATCAATGTGAGGGTAATGCCGACTCAGGCAAGGTGGAAGCTGGCGGATCTCATAAAGGTCACGTGCAAGAGAAGAAAAACCGGAAGGTAAAGAAGGCAAAGAAAACAGTCCAAACCAGCATGGAAAGTTCAGGTTCTGGCTCAGCAAAACCGTCTTTCCCAGCAAAGAAAAGGGTGCTGGTGCCACAAAATATTCTTTCAGAGACTCCAATGAAGAATTTAAAGCTTGGAGATTCTCCTAGTGAAATTAACAAAGAGAAAGAGAGAGTGGAAAATGTTCCAGTCATGGAAAGTGACAGGCTTATACAAAGTGAAAAATCTATCCCTGTTCTTTCACCTTTCTTTTGGTTGAGAGAGGAAAAAGATGGTGAAGAGTTGAGTCAACCCACTGACGAGGATCAAACTATTGATGGCTCAACACCAATTCCTCCTTCATTTAGTGATCTCAAGGACTCGGATGATGAAAAAACTTCTAATGTCGCACCATTCGATGAGATGCAAAATCAAATCTCTGTTAATTTATTTGATAGTGAGATGTTTGAATGGACACAAATGCCTTGCTCTCCTGAATTATTTTCAAGTCCGTCTAAAATGCAGCTGCAGGTCATGGATACTTATGAAGATGATGAAAATCAAGATGAATTGGTGGCTGCCTCACAAGAGCTGGACGCAAATCTACCAGGTGCTAATGCTGACAGCATAAAGTTTGAGAATCCCAAAGGAAATAAAACAGCTGATGTATTACCACCAAGTGTGTCTCCTCTAATTAGAAGTTCTGTTGATATAAATGGAAAAATGAAGTCTAGGAAAAGAGGAAGGAAGGCTGGGGAAAAAATTAGTCGAGAGGAGATTGGTGAACCAAAAAATTCAATTGATGGAATGGATGTTGATGCGAATATATCACTAAAAGTCACTCAGGAACAAGCATTGGACTATAAAACCAAATCTTCTAACCTGGGGAAGGGTAGTAGAAGGAGCAAGAGGGTTTGTTTCAATACGAGTTCAATTCCAACATCTGTAAGTGCATGTACAGTACCACCAAGTGTGTCTCCTCTAATTAGAAGTTCTGTTGATATAGATGGAAAAATGAAGTCTAGGAAAAGAGGAAGGAAGGCTAGGGAAAAAATTAGTCGAGAGGAGATTGGCGAACCAAAAAGTTCAATTAATGGAATGGATGTTGATGCGAATATATCACTAGAAGTCACTCAGGAACAAGCATTGGACTATACAACCAAATCTTCTAACCTGGGGAAGGGTAGTAGAAGGAGCAAGAGGGTTTGTTTCAATACGAGTTCAATTCCAACATCTGTAAGTGCATGTACAGTCCCTGATACGTTAGGAGTTCTAAACATAGGTGAAATGAAGATGGTTACAAATTCATGTACTTTGCCATGCAAACAAGAAAATGAGAAGCATTGTCCTCGGGAGGTTGCTGGAAAAAGCCAGAAGATAAGACCTGGAAAACAAAATACGGACCAAACCAATGAGTCTGCTTGTTCTGATTCATCCATTTTCAGTCTGCAGACAAATACTGATGTGACTACCTCTAAAAGCAAGGAATCCAAAAGCATGTTTTCTAGAAAATCTATGTCTGGCTGTAGAAAATTGAGAAATACTAAAAGGTCAAAACCTTCCTCTGAATGTACCTCTATTACTAAAAATGAAGAAATTCTACCTAATGAAAGTATTCATGAAGGTGCTATTGACAAGGATTTGAATGATACATCAAACGAGAAAGATTGTTCTTTGACTGATAAAACAGTTTTAAGGAAATGTGAAAGCCATGTCAAAAGGTATCCATGTGTTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCTCTATGGTGCATTATCTTGATGGCAAGCCTGTACCTGCAGATTATGAAGGGCCGTCTAAAGTAACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTTGACGGTGATAATGCAATAAATCTTGAAGCTGAAATAAGTAGAAGTCGAAGAATTACATGTAGTTTTTGTGGACTTAAAGGGGCTGCACTTGGTTGTTATGAGAAAAGTTGTCGCAGGAGCTTTCACGTTCCGTGTGCCAAGTGGACTTCTCTGTGTCGTTGGGATACGCAAAACTTCGTCATGTTATGCCCTCTACATGCTCCCTCCATGTTGCCCTGTGAAGGTTCAGGATCCCAAAAAGGGAGCAAGAAAGGCCCAGGTAGAGATGGCAGAAGACATGGTCCTAATCTTGACACTACAAGCCAAACTCGGGCTACTCATGGATCTTACAAGAAAATTGTTCTATGTTGTTCTGCTCTATCCGTACAGGAGAAGGAAATTGTTTCCAAATTCGAAAGTGTATCAAAAGTTACTGTTTTGAAAAATTGGGACTCAAGTGTCACCCATGTTATAGCCTCAACGGATGAAAATGGGGCATGCAAAAGGACCCTGAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTCTCAAAGTTGAGTGGATCAAAGCTTGCATGAAGCAAATGAATCCTGTTGATGAGGAGTGTTATGAAATTAATGTTGACATCCACGGAATTAGGGATGGTCCTCGTCTTGGACGACAAAGAGTATTGAACAAGCAACCAAAGCTTTTTTATGGCTATAAGTTTTATTTTATGGGAGATTTTATACCTTCATACAAGGGGTATCTGCAAGACCTTGTGGTTGCTGCTGGAGGGATAATTCTGCATAGAAAACCAGTATCTGGTGACCCGAAGTCAATGTTACCAGATACGCATCCATACCAGACCCTCATAATTTACAGCCTTGAGCTGCCAGATAACTGTAAGCCTTCAAAAACGGATACAATTTGCAGACAAAGGTGTCATGATGCAGAGGTTCTGGCGAGTTCTACAGGCTCAAAGGTTGTAACTAATACATGGATTCTGAATTCAATTGCAGCCTGCAAACTGCAGTGCCTTGCTCAATGA 3246 0.406 MGDLERMGRELKCPICWSLFDSAVSLTCNHIFCNSCIVKSMKSASACPVCKIPFTRREVRPARHMDNLVNIYKNMEIASGMNLFVTQNVPHNVENQCEGNADSGKVEAGGSHKGHVQEKKNRKVKKAKKTVQTSMESSGSGSAKPSFPAKKRVLVPQNILSETPMKNLKLGDSPSEINKEKERVENVPVMESDRLIQSEKSIPVLSPFFWLREEKDGEELSQPTDEDQTIDGSTPIPPSFSDLKDSDDEKTSNVAPFDEMQNQISVNLFDSEMFEWTQMPCSPELFSSPSKMQLQVMDTYEDDENQDELVAASQELDANLPGANADSIKFENPKGNKTADVLPPSVSPLIRSSVDINGKMKSRKRGRKAGEKISREEIGEPKNSIDGMDVDANISLKVTQEQALDYKTKSSNLGKGSRRSKRVCFNTSSIPTSVSACTVPPSVSPLIRSSVDIDGKMKSRKRGRKAREKISREEIGEPKSSINGMDVDANISLEVTQEQALDYTTKSSNLGKGSRRSKRVCFNTSSIPTSVSACTVPDTLGVLNIGEMKMVTNSCTLPCKQENEKHCPREVAGKSQKIRPGKQNTDQTNESACSDSSIFSLQTNTDVTTSKSKESKSMFSRKSMSGCRKLRNTKRSKPSSECTSITKNEEILPNESIHEGAIDKDLNDTSNEKDCSLTDKTVLRKCESHVKRYPCVFCLSSEESEASGSMVHYLDGKPVPADYEGPSKVTHCHRNCTEWAPNVYFDGDNAINLEAEISRSRRITCSFCGLKGAALGCYEKSCRRSFHVPCAKWTSLCRWDTQNFVMLCPLHAPSMLPCEGSGSQKGSKKGPGRDGRRHGPNLDTTSQTRATHGSYKKIVLCCSALSVQEKEIVSKFESVSKVTVLKNWDSSVTHVIASTDENGACKRTLKVLLGILEGKWILKVEWIKACMKQMNPVDEECYEINVDIHGIRDGPRLGRQRVLNKQPKLFYGYKFYFMGDFIPSYKGYLQDLVVAAGGIILHRKPVSGDPKSMLPDTHPYQTLIIYSLELPDNCKPSKTDTICRQRCHDAEVLASSTGSKVVTNTWILNSIAACKLQCLAQ* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01441 1081 Gene3D BRCT domain 854 961 IPR036420 -
Lapu6g01441 1081 SMART ring_2 13 50 IPR001841 -
Lapu6g01441 1081 SMART ring_2 765 811 IPR001841 -
Lapu6g01441 1081 FunFam Protein BREAST CANCER SUSCEPTIBILITY 1 like 966 1074 - -
Lapu6g01441 1081 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 441 1078 IPR031099 GO:0006281|GO:0006974
Lapu6g01441 1081 FunFam Breast cancer type 1 susceptibility protein homolog 855 961 - -
Lapu6g01441 1081 SUPERFAMILY RING/U-box 4 75 - -
Lapu6g01441 1081 ProSiteProfiles Extended PHD (ePHD) domain profile. 692 812 IPR034732 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 652 669 - -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 458 483 - -
Lapu6g01441 1081 Gene3D BRCT domain 966 1074 IPR036420 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 359 386 - -
Lapu6g01441 1081 ProSiteProfiles BRCT domain profile. 965 1071 IPR001357 -
Lapu6g01441 1081 CDD BRCT_Bard1_rpt1 858 932 - -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 578 595 - -
Lapu6g01441 1081 SMART PHD_3 764 812 IPR001965 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 567 595 - -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 216 253 - -
Lapu6g01441 1081 FunFam Breast cancer associated RING 1 1 83 - -
Lapu6g01441 1081 SUPERFAMILY BRCT domain 969 1077 IPR036420 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 226 240 - -
Lapu6g01441 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Lapu6g01441 1081 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 819 849 - -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 369 384 - -
Lapu6g01441 1081 SUPERFAMILY BRCT domain 858 958 IPR036420 -
Lapu6g01441 1081 Pfam BRCA1 C Terminus (BRCT) domain 883 931 IPR001357 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 96 148 - -
Lapu6g01441 1081 Pfam PHD-like zinc-binding domain 733 811 - -
Lapu6g01441 1081 FunFam Breast cancer associated RING 1 689 814 - -
Lapu6g01441 1081 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Lapu6g01441 1081 ProSiteProfiles BRCT domain profile. 883 944 IPR001357 -
Lapu6g01441 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 813 IPR013083 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 627 669 - -
Lapu6g01441 1081 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Lapu6g01441 1081 SMART BRCT_7 853 934 IPR001357 -
Lapu6g01441 1081 SMART BRCT_7 967 1074 IPR001357 -
Lapu6g01441 1081 MobiDBLite consensus disorder prediction 637 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01441 Lapu-Chr6 14169199 14175095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01441 10 59 C3H Transcription Factor Family AT3G07200 36.000 8.36e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01441 K10683 - gmx:100804958 991.875