Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01430 ATGAGACTTTCTTCGGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACCAGGTCACAGTGAACAAGTGGCTGTGTCGACCAACAGGGAAGTAGATGCTCATATCCCGAACTACCCCAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCATGCTGATGCAGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTCAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCGGAGTTGGGCACTCCTAGTAAACAGCCAACAAACTACTTCTGCAAAACTTTGACCGCAAGTGACACAAGCACTCATGGGGGATTCTCAGTACCTCGCCGTGCAGCTGAAAAAGTGTTCCCTGCACTGGATTTCTCTCAGCAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTGCTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTTCTTCTTGGCATCCGTCGCGCTAATCGACCACAAACTGTGATGCCTTCTTCAGTGTTGTCGAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCTTAGCGAAGTACGTTAAAGCTGTGTATCATACTCGGGTTTCAGTTGGTATGCGGTTCAGGATGCTGTTCGAAACTGAGGAATCGAGTGTGAGACGACACATGGGTACAATAACTGGTATTAGTGACCTGGATCCTGCCCGTTGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGCTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCATCTCCTTTCCCCCTTAGGCTTAAACGACCATGGCCTCCAGGACTGCCCTCATTCCATGGCATGAAGGATGATGATTTTGGCCTGAATTCATCTCTGTTGTGGCTCCGAGATGGTGATAGAGGTCTTCAGTCTCATACTTTTCAGGGGATTGGTGTTAATCCTTGGATGCAGCCAAGATTTGATCCCTCAATGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATTCTGCTTCTATACTTCAATTTCAGCAACAGCAGAACTTCCCAAACAGGACTGCTTCTTTAGTGCAGGCCCAGATGTTGCAGCAGCCACAACATCAGCAGATTTTTGGAAATAATCAAGAGAATCAGCATTCACCACAATCTCAGCTGCAAACTCAGGCTCATCTTCAGCAACATCTACAACATCAGCACTCATTCAATAGTCACCATCATCACCAGCAGCAGCAGCAACAATTACAACAGACACAGCAGCAACAACAACAGCAACAACAAGTTGTAGATAATCAGCAAATTTCTAGTGCAGTTTCTTCAATGCCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCGATGCAAGCTATCTCTTCCTTGTGTCAACAGCAAAACTTTTCTGATTCAAACGGGAACTCTGTGCCTACTATTGTTTCTCCCCTGCACAGTATCCTGGGTTCATTTCCACAGGATGAAACATCTCACCTCTTGAACCTTCCTCGGACAAGCTCCTGGATTCCTGTTCAAAATTCAACTGGGTGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTCTTCCTTCCGGAGTCTCTCAATGTGTTCTACCTCCGGTGGAGCAGCTAGGGCAGTCCCAGAGTACTGTGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAGTGCTCAATAGATCAAGAAGGGAGCAATGATCCACAAAACCATCTCTTATTTGGTGTTAATATAGATCCCTCGTCCCTTCTCATGCCTAATGGAATGTCAAGCCTTAAGGGGGTTAGCAGCAACAATGACTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATACGACCACAGGAACCGACTCTTCATTGAATCATGGAATAACACCCAGTGTAGGCGGTGAATCGGGGTACTTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCAGCAGCTACCATGAGTTGCGTAGTGAACTTGCTCAAATGTTTGGCCTTGAAGGCGAATTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTCTCTCCTCAGGAAGTGCAGCAAATGGGGAACTCTGGTCTTGAGCTCTTGAATTCAGTTCCAATTCAAAGGCTCTCCAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACCGGAATAACAGCCGTGGGGTCTTTAGACTACTGA 2733 0.464 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPPGHSEQVAVSTNREVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRHMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSSLLWLRDGDRGLQSHTFQGIGVNPWMQPRFDPSMLNMQTDMYQAAAAAAVQEMRGLDPSKQHSASILQFQQQQNFPNRTASLVQAQMLQQPQHQQIFGNNQENQHSPQSQLQTQAHLQQHLQHQHSFNSHHHHQQQQQQLQQTQQQQQQQQQVVDNQQISSAVSSMPQFVSAPPPQSPPMQAISSLCQQQNFSDSNGNSVPTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPVQNSTGWPSKRVAVDPLLPSGVSQCVLPPVEQLGQSQSTVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDPSSLLMPNGMSSLKGVSSNNDSSTLPYQSSNYLNTTTGTDSSLNHGITPSVGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITAVGSLDY* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01430 910 Pfam AUX/IAA family 770 862 IPR033389 -
Lapu6g01430 910 Gene3D - 291 363 - -
Lapu6g01430 910 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu6g01430 910 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lapu6g01430 910 SUPERFAMILY CAD & PB1 domains 776 852 - -
Lapu6g01430 910 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lapu6g01430 910 FunFam Auxin response factor 125 229 - -
Lapu6g01430 910 FunFam Auxin response factor 291 363 - -
Lapu6g01430 910 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Lapu6g01430 910 MobiDBLite consensus disorder prediction 737 770 - -
Lapu6g01430 910 Coils Coil 529 549 - -
Lapu6g01430 910 Gene3D - 125 228 IPR015300 -
Lapu6g01430 910 MobiDBLite consensus disorder prediction 495 553 - -
Lapu6g01430 910 MobiDBLite consensus disorder prediction 527 553 - -
Lapu6g01430 910 Gene3D - 774 866 - -
Lapu6g01430 910 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu6g01430 910 FunFam Auxin response factor 773 866 - -
Lapu6g01430 910 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Lapu6g01430 910 MobiDBLite consensus disorder prediction 495 520 - -
Lapu6g01430 910 SMART B3_2 127 229 IPR003340 GO:0003677
Lapu6g01430 910 CDD B3_DNA 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01430 Lapu-Chr6 14082450 14089761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01430 1 483 B3 DNA Binding Superfamily AT1G30330 85.656 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu6g01430 AUX_IAA 2.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01430 - - gmx:100798719 1575.84