Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01424 ATGCCACACAGCACCGACGTGCCACCTTCTTCTACGTCTTCTCAACGCCATGACAAAGAAAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTCTTTACTTTTGCGGATCATCTTGACATGGCCTTGATGACCATTGGCACGATCTGTGCCATGGCTAATGGCTGGTCGCAGCCTATCATGACTGTCATTTTAGGAAAGCTTATCAACACCTTTGGCTCCACTGATCCATCAAATACCATCAAGGAAGTTTCTAAGGTTTCATTATTATTTGTATACCTGGCTATTGCGACTGGAATTGCCTCGTTTCTTCAGGTAGCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCGAGGATTCGCGGTTTGTACTTGAAAACTATACTGAAGCAGGACATAGCTTTCTTTGACACCGAGACAACAACTGGTGAGGTAATTGGGAGGATGTCAGGTGACACCATTCTCATTCAAGATTCCATGGGAGAAAAGGTCGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTGAGAGGATGGCGTCTTGCTGTTGTTTTGCTCGCATGTATACCATGTATTGTTGTTACTGGTGGAATTCTGTCCATGTTGATGAGTAAAATGTCAACTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAACTGTGGTTGAACAAACTGTGGGAGCTATCAGAACAGTTGCTTATAAAACTATGGTTCAACAAGGGATGGCCTCGGGGTTAGGACTCGGAGTACTTTTGTTGATTGTCTTCTGCACCTATGCACTTGCAATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATACAATGGTGGAAGCGTCATCACTGTAATAGTAGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCAAGCCTAAATGCATTCGCTGCAGGCCAAGCAGCAGCATACAAGATGTTTGAGACAATTAAAAGAAAGCCAAAGATCGATGCTTATGACACCAATGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTGTACTTTAGCTACCCTGCGAGGGCAAATGTGCAGATCTTCTCTGGATTCTCATTATATGTTCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAATCTACTGTGATAAGTTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAAATATTTATAGATGGTGTCAATTTGAAGAATTTTCAGGTTAAATGGATAAGAGAACAAATTGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAAAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATAAAATCAGCAATAACACTTGCCAATGCCAATAAGTTCGTTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCTGAACGTGTCGTTCAAGAAGCATTAGAGCAAGCAATGTCAAAAAGGACAACCGTAGTGGTTGCACATCGCTTGACAACAATTAGAAATGCTGACACCATAGCAGTGATTCATCAAGGAAAAATTGTGGAGCAAGGAACTAATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAGCTAAGGAAGCTCAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAGTAACAATGTTAATTTAGATAGTCACATAGCTAGATTTTCCACCCAGAGAGAAGTTTCATTAAGCAGAGGTTCATCAAGTAGACACTCCCAGTCACATAGCTTTGCTCTTTCTCACCGAAGTGGGGTACATGAATCTGTAGAAATAGAAGATGGGGATGCTGAAAAAAGTAAAGTTGATACCAGTAAGTCCGTAAAGGTTTCTTTGAGACGTTTGGCCAGCTTAAACAATCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTATGTTTGGCTTCTTGTTTTCCTCAGCAATAACTACGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGAGTCTAGGTTCTGGGCACTTCTATATGTAGGTTTGGGTTTAGTTACTCTTGTGACCATACCTGTGCAAAATTACTTCTTTGGCGTTGCTGGTGGAAAATTAGTAGAAAGAATTCGTTCACTGACATTTGAAAGGGTTGTCCATCAAGAAATCAGTTGGTTTGATGATCCAGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTGTCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGCGACACATTGGCCCTCATTGTGCAAAACTCATCAACAATCATAGCTGGTCTGGTTATATCGTTCACTGCTAATTGGATTCTTGCTTTCATAATTCTGGCTGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAAAGTATGAAGAGGCAAGTGAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTTTGTGCCGAATCGAAGGTGATGGACATGTACCGGAAGAAATGCTTAGAGCCGGAAAAACAAGGTGTTCGGCTGGGGCTTACTAGTGCCTTGGCTCCAGACACCAACAAAGCCAAAGATTCCGCAGCTTCAATATTTAACATTCTTGACAGTAAACCTACCATTGACTCCAGCAACAGTGAGGGTACAACACTAGAAGCCATTGCTGGTGATATTGAACTTCAGCATGTCACTTTTAATTACCCAACTAGGCCTCATATTCAAATTTTCAAAGATTTGTGTCTAAGCATTCCAGCTGGAAAGACAGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTGGAGAGATTTTACAACCCTCATACTGGACGTATACTACTAGATGGAGTGGATATAAAACAGTTCAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAACGAAAGCATTCGTGTCAACATAGCTTATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAACTGCAGCAGCCAAAGCATCCAATGCACACCAATTCATATGTGCTCTTCCCGAAAGCTACGACACCTCTGTTGGAGAAAGAGGTACACAATTGTCAGGAGGACAAAAGCAGCGGATAGCCATTGCAAGAGCCATGCTGAAAGACCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGAAAGTAGTACAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACTGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGCGCTGACATAATAGCTGTAATGAAAAATGGAGCGGTTGCTGAAAAGGGGAGACATGATGACTTGATGAAGATTACTGATGGAGTCTATGCATCATTGGTTGCTCTACATGTGAGTGCATCGTAA 3588 0.427 MPHSTDVPPSSTSSQRHDKEKANQKVPFYKLFTFADHLDMALMTIGTICAMANGWSQPIMTVILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIATGIASFLQVACWMVTGERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWRLAVVLLACIPCIVVTGGILSMLMSKMSTRGQAAYAEAGTVVEQTVGAIRTVAYKTMVQQGMASGLGLGVLLLIVFCTYALAMWYGSKLVIEKGYNGGSVITVIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVMEDIRGDIELRDVYFSYPARANVQIFSGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEIFIDGVNLKNFQVKWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANANKFVDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVIHQGKIVEQGTNDELIKDVDGAYSQLIRLQEGAKEAQGSHNSEAEKSSNNVNLDSHIARFSTQREVSLSRGSSSRHSQSHSFALSHRSGVHESVEIEDGDAEKSKVDTSKSVKVSLRRLASLNNPEVPVLVLGSVAAIIHGLVFPMFGFLFSSAITTFFEPPEKQRKESRFWALLYVGLGLVTLVTIPVQNYFFGVAGGKLVERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNSSTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFSADAKVKYEEASEVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLTSALAPDTNKAKDSAASIFNILDSKPTIDSSNSEGTTLEAIAGDIELQHVTFNYPTRPHIQIFKDLCLSIPAGKTVALVGESGSGKSTVISLLERFYNPHTGRILLDGVDIKQFRLSWLRQQMGLVGQEPILFNESIRVNIAYGKEGVATEEEITAAAKASNAHQFICALPESYDTSVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADIIAVMKNGAVAEKGRHDDLMKITDGVYASLVALHVSAS* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01424 1195 Pfam ABC transporter 971 1120 IPR003439 GO:0005524
Lapu6g01424 1195 SUPERFAMILY ABC transporter transmembrane region 671 933 IPR036640 GO:0005524|GO:0016020
Lapu6g01424 1195 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g01424 1195 Gene3D ABC transporter type 1, transmembrane domain 913 949 IPR036640 GO:0005524|GO:0016020
Lapu6g01424 1195 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 307 - -
Lapu6g01424 1195 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 346 582 IPR003439 GO:0005524
Lapu6g01424 1195 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 952 1189 IPR003439 GO:0005524
Lapu6g01424 1195 FunFam ABC transporter B family member 9 30 342 - -
Lapu6g01424 1195 ProSitePatterns ABC transporters family signature. 1092 1106 IPR017871 GO:0005524|GO:0016887
Lapu6g01424 1195 SMART AAA_5 373 559 IPR003593 GO:0016887
Lapu6g01424 1195 SMART AAA_5 979 1166 IPR003593 GO:0016887
Lapu6g01424 1195 Pfam ABC transporter transmembrane region 685 911 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g01424 1195 Pfam ABC transporter transmembrane region 43 238 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g01424 1195 MobiDBLite consensus disorder prediction 618 640 - -
Lapu6g01424 1195 Pfam ABC transporter 366 513 IPR003439 GO:0005524
Lapu6g01424 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 584 IPR027417 -
Lapu6g01424 1195 Gene3D - 642 663 IPR027417 -
Lapu6g01424 1195 Gene3D - 336 585 IPR027417 -
Lapu6g01424 1195 FunFam ABC transporter B family member 1 942 1192 - -
Lapu6g01424 1195 PANTHER ABC TRANSPORTER B FAMILY 12 593 IPR039421 -
Lapu6g01424 1195 Gene3D ABC transporter type 1, transmembrane domain 30 603 IPR036640 GO:0005524|GO:0016020
Lapu6g01424 1195 Gene3D ABC transporter type 1, transmembrane domain 664 905 IPR036640 GO:0005524|GO:0016020
Lapu6g01424 1195 FunFam ABC transporter B family member 1 336 585 - -
Lapu6g01424 1195 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 935 - -
Lapu6g01424 1195 CDD ABC_MTABC3_MDL1_MDL2 952 1188 - -
Lapu6g01424 1195 CDD ABC_MTABC3_MDL1_MDL2 346 584 - -
Lapu6g01424 1195 Gene3D - 950 1190 IPR027417 -
Lapu6g01424 1195 MobiDBLite consensus disorder prediction 618 656 - -
Lapu6g01424 1195 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g01424 1195 FunFam ABC transporter B family member 1 664 912 - -
Lapu6g01424 1195 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524|GO:0016887
Lapu6g01424 1195 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 911 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g01424 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 942 1190 IPR027417 -
Lapu6g01424 1195 SUPERFAMILY ABC transporter transmembrane region 30 330 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01424 Lapu-Chr6 14023385 14028896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01424 4 584 Calmodulin-binding Proteins AT2G36910 37.417 8.45e-114 383