Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01403 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAAGCATACGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATTAGTAGCCTGCAGAATAACAACAGGCAAGTTGAGTTGCAAATGATGGGTGAGTCTTTGGGCTCTATGACTGCCAAGGATCTAAAAAATCTGGAGAGTAAACTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAAATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCACAATATGGGTGTGTTGCCTGGAGGCACAAGCTATGACTCTATGCAGTCTCAGCAGCCATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAATAACCAGTATGCCCGACAAGATCAGATGTCCCTTCAATTAGTGTAA 738 0.4404 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISSLQNNNRQVELQMMGESLGSMTAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHNMGVLPGGTSYDSMQSQQPFDSRGYFQVTGLQPNNQYARQDQMSLQLV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01403 245 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Lapu6g01403 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Lapu6g01403 245 Pfam K-box region 100 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu6g01403 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 199 - -
Lapu6g01403 245 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Lapu6g01403 245 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Lapu6g01403 245 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Lapu6g01403 245 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Lapu6g01403 245 ProSiteProfiles K-box domain profile. 102 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu6g01403 245 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lapu6g01403 245 Coils Coil 143 163 - -
Lapu6g01403 245 Coils Coil 102 129 - -
Lapu6g01403 245 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lapu6g01403 245 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lapu6g01403 245 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lapu6g01403 245 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01403 Lapu-Chr6 13847834 13856829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01403 14 245 MADS-box Gene Family AT3G58780 66.109 1.51e-105 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu6g01403 K-box 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01403 K09264 - gmx:732595 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01403 6 13847834 13856829 Lapu6g01403 6 13847834 13856829 ECH
Lapu3g03155 3 54910366 54915346 Lapu6g01403 6 13847834 13856829 PCT