Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01399 ATGGCTACCAAAAAAGTCCAACCCATTGGCATTGACTTGGGCACAACCTATAGCTGCGTAGCAGTGTGGCAACACAACCGAGTCCAAGTCATTTCCAACGAACAAGGCAACCGCACTACCCCTTCCTACGTTGCCTTCACCGACACTCAGAGGTTGTTGGGCGATGATGCCATGAATCAGCGATCCAAGAACCGTCACAACACTGTCTTCGATGCCAAACGTTTGATCGGTCGCAGATTTTCCGACATGACTGTTCAGCAAGACATGAAGTTGTGGCCCTTTAAGGTTGTCCCTGGGACCAGAGACAAGCCGATGATTGCGGTTACCTACAAAGGCGAAGAGAAACACCTTGCAGCAGAAGAGATATCTTCCATGGTGTTGTTTAAGATGAAGGAGGTTGCTGAAGCTTATTTGGGTCACGCAGTGAAGGATGCGGTTATCACTGTCCCTGCTCACTTCACCAACGCGCAGAGACAAGCCACAAAGGATGCTGGGAAAATCGCTGGTTTGAATGTGTTGAGGATCATCAACGAGCCAACGGCAGCTGCTATTGCTTATGGATTGGACAAGAAAGGATTCAGAGAGGGCGAGCAGAACGTGCTTGTGTTTGATCTCGGTGGTGGTACTATTGACGTTTCCCTGGTGACTATTGATGAAGGGATGTTTAAGGTTAAGGCCACGGTGGGAGATACTCATTTGGGTGGTGTAGATTTTGATAACAAATTGGTGAACCATCTTGTGAATGTGTTTAGAGAGAAATACGAGAAGGATATTAGTGGGAACGCGAAAGCTTTGGTAAGATTAAGGTCAGCGTGCGAAAAAGCTAAGAGGATTCTGTCTTCCACTTCCCAGACCATGATAGAGCTTGATTCTCTATATGACGGGATTGATCTATATGCCACTGTTACGAGGACCTTGTTCGAGGAACTGAACAAAGACTTATTCAGTAAGTGTAAGGAGACAGTGGAAAAGTGCCTGGTTGAGGCCAAGGTAGATAAGATCCAAGTTCATGAGATCGTTCTTGTCGGGGGTTCCACTAGAATTCCAAAGGTACAACAACTTCTGAAGGACATGTTCAGCGTCAATGGTAACATCAAAGAGCTTTGCAAAAGCATCAACCCTGACGAGGCAGTGGCGTACGGTGCTGCAGTTCAGGCAGCAATTTTGAGCGGTGAAGGAGAAAAACAAGTGGAGGAATTGTTGGTATTGGATGTGATGCCAATTAGTCTCGGAATTGAGGGAGCTGGGGGTGCCATGTCAGTGTTGATCCCCAAGAACACCATGATCCCCACCAAGAAGGAGAGGGTTTGTTCCACCTTCTACGACAATCAGAAAAGCGTCACGGTCAAAGTGTTTGAGGGAGAACAAGTCAAGGCAAAAGACAACTTCTTTCTCGGCAAGTTTGTCCTCAATGGATTCGTGCCTTCACTAAAGGGAGTCCCACAGATCAACGTTAGGTTTGACGTGGATGCTGATGGTATTGTGGAGGTGACGGCGGAAGATAAAGCCACAGGGCTAAAAAAGAAGGTGGCAATCATTGGCAAGGGAAGGTTGAATCCGGAAGAGATAAGAAAAATGGTGAGGGATTCAAAGAAGTATAAGGCAGAGGACGAGGTTGGGAAGAGGAAGGTAAAGGCAAAGAACGCACTTGAGAATTTCGCTTATGAAATGAGGGAGAGAGCGAGAAGGATAGAAGAGGCAGTGGAAGAAACCATAGAGTGGCTAGAGAATAACCAATTAGCGGAGATAGAAGAGATCGAGTACAAGAAGCAGGAGTTAGGAAGGTATCTAAGAGATAATCCCAATTCAAACAGTACCTCAAATTCTGAGATTAAGGTTCCTATATGGTGCACATGGAGATGTCCACCAAGTGAGTGGGTTTGTCTGAACACGGATGGATCGGTGTTTGAGGACCGACGAACAGGGCGTAGCAGAGGTGCGTGTGGGGGCCTAGTTCGAGATTGCGCAGGAGGTTTTCTAGGTGGTTTCAGTGTTAATCTGGGGCCCACATCGGTGACATTAGCGGAGTTGTGGGGGGTTGTTCACGGTCTGAAGTTGGCGTGGGATCTTGGGTGTAAGAAGGTGAAGGTGGATATTGATTCGGGTCATGCTCTTGGTCTTGTTAGGCACTGTCCAGTGGCTAACGACCCAGCTTTTGCGGTGGTTTCGGAGATCAACGAGCTTGTTCGGAAGGATTGGTTGGTGGAGTTCTCGCACGTGTTTAGAGAATCTAATCGTGCGGCTGATCGCTTGGCTCACTCGGGACACTCCCACTCCTTGGAATCCGGTGCCAAACGATTTTCGGACCCTCCATCAGCCATTGTTGATATTCTTCGAGATGACTTGGCAGGTCTTGCAAAGCAACGTGGCGTTCCCTAG 2379 0.4788 MATKKVQPIGIDLGTTYSCVAVWQHNRVQVISNEQGNRTTPSYVAFTDTQRLLGDDAMNQRSKNRHNTVFDAKRLIGRRFSDMTVQQDMKLWPFKVVPGTRDKPMIAVTYKGEEKHLAAEEISSMVLFKMKEVAEAYLGHAVKDAVITVPAHFTNAQRQATKDAGKIAGLNVLRIINEPTAAAIAYGLDKKGFREGEQNVLVFDLGGGTIDVSLVTIDEGMFKVKATVGDTHLGGVDFDNKLVNHLVNVFREKYEKDISGNAKALVRLRSACEKAKRILSSTSQTMIELDSLYDGIDLYATVTRTLFEELNKDLFSKCKETVEKCLVEAKVDKIQVHEIVLVGGSTRIPKVQQLLKDMFSVNGNIKELCKSINPDEAVAYGAAVQAAILSGEGEKQVEELLVLDVMPISLGIEGAGGAMSVLIPKNTMIPTKKERVCSTFYDNQKSVTVKVFEGEQVKAKDNFFLGKFVLNGFVPSLKGVPQINVRFDVDADGIVEVTAEDKATGLKKKVAIIGKGRLNPEEIRKMVRDSKKYKAEDEVGKRKVKAKNALENFAYEMRERARRIEEAVEETIEWLENNQLAEIEEIEYKKQELGRYLRDNPNSNSTSNSEIKVPIWCTWRCPPSEWVCLNTDGSVFEDRRTGRSRGACGGLVRDCAGGFLGGFSVNLGPTSVTLAELWGVVHGLKLAWDLGCKKVKVDIDSGHALGLVRHCPVANDPAFAVVSEINELVRKDWLVEFSHVFRESNRAADRLAHSGHSHSLESGAKRFSDPPSAIVDILRDDLAGLAKQRGVP* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01399 792 FunFam Heat shock 70 kDa 234 317 - -
Lapu6g01399 792 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 551 IPR029047 -
Lapu6g01399 792 SUPERFAMILY Actin-like ATPase domain 9 190 IPR043129 -
Lapu6g01399 792 Pfam Hsp70 protein 9 596 IPR013126 GO:0005524|GO:0140662
Lapu6g01399 792 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Lapu6g01399 792 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Lapu6g01399 792 CDD RNase_H_like 629 753 IPR044730 -
Lapu6g01399 792 SUPERFAMILY Actin-like ATPase domain 197 389 IPR043129 -
Lapu6g01399 792 FunFam Heat shock protein 70 9 198 - -
Lapu6g01399 792 Gene3D - 9 387 - -
Lapu6g01399 792 Coils Coil 558 578 - -
Lapu6g01399 792 Gene3D - 627 756 IPR036397 GO:0003676
Lapu6g01399 792 PANTHER HEAT SHOCK PROTEIN 70KDA 9 570 IPR013126 GO:0005524|GO:0140662
Lapu6g01399 792 PRINTS 70kDa heat shock protein signature 208 218 - -
Lapu6g01399 792 PRINTS 70kDa heat shock protein signature 7 20 - -
Lapu6g01399 792 PRINTS 70kDa heat shock protein signature 399 418 - -
Lapu6g01399 792 PRINTS 70kDa heat shock protein signature 145 165 - -
Lapu6g01399 792 PRINTS 70kDa heat shock protein signature 372 392 - -
Lapu6g01399 792 PRINTS 70kDa heat shock protein signature 35 47 - -
Lapu6g01399 792 PRINTS 70kDa heat shock protein signature 480 496 - -
Lapu6g01399 792 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Lapu6g01399 792 SUPERFAMILY Ribonuclease H-like 626 757 IPR012337 -
Lapu6g01399 792 Gene3D - 191 369 - -
Lapu6g01399 792 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 546 595 IPR029048 -
Lapu6g01399 792 Gene3D Actin; Chain A, domain 4 234 317 - -
Lapu6g01399 792 ProSiteProfiles RNase H type-1 domain profile. 623 757 IPR002156 GO:0003676|GO:0004523
Lapu6g01399 792 FunFam Heat shock 70 kDa protein 393 547 - -
Lapu6g01399 792 Gene3D - 547 600 IPR029048 -
Lapu6g01399 792 Gene3D - 70 125 - -
Lapu6g01399 792 Pfam Reverse transcriptase-like 640 754 IPR002156 GO:0003676|GO:0004523
Lapu6g01399 792 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 546 IPR029047 -
Lapu6g01399 792 FunFam Heat shock 70 kDa protein 70 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01399 Lapu-Chr6 13767208 13774785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01399 1 593 Calmodulin-binding Proteins AT1G16030 65.954 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01399 K03283 - gmx:100795699 1335.09