Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01392 ATGGCCGATTTGAACCATGACGTGGCTTTTGACGTGAACGCTGATTCCTCTAAAAGTTCTGATGACAACGAAGCCTCTGTGCCCCTTCTGCAGAAGTTGGTGGCAGAGGTGGTGGGGACATACTTTTTGATATTTACAGGGTGTGGTTCGGTTGTGGTGAACCTTGGCAACGACAAGGTGGTGACACAACCTGGGATTTCGATTGTTTGGGGACTTGCTGTTACGGTTTTGATTTACTCTGTTGGTCACATCTCCGGCGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTTCCCTTGAAGGAGGTACCAGCATATATAGTGGCCCAGCTTGTTGGAGCCATACTTGCTAGTGGAACTCTCAGACTTGTATTCAGAGGCAAGGGTGATCATTTTCCAGGAACAGTCCCTGCTGGTTCTGATGTGCAAGCTTTTGTGATGGAATTCTTGATCACTTTTCTTCTTATGTTCGTCATTTCTGGAGTTGCCACCGATAACAGAGCGGTTGGTGAGTTGGGAGGGGTTGCAGTTGGGTCTACGATACTTCTAAATGTGATGATTGCAGGGCCAATCACTGGAGCATCAATGAATCCAGTAAGAAGCTTAGGACCTGCTATTTTGCACCGTGAATTTAGGGGAATATGGATATATATGGTGTCACCGATTCTTGGAGCTTTAGCAGGTACATGGGTCTACAATTTCATCAGGACTGCTTCTTTCCTCCAAGCTCATCGTCAAGCTCAGTGA 762 0.4685 MADLNHDVAFDVNADSSKSSDDNEASVPLLQKLVAEVVGTYFLIFTGCGSVVVNLGNDKVVTQPGISIVWGLAVTVLIYSVGHISGAHFNPAVTIAHASTKRFPLKEVPAYIVAQLVGAILASGTLRLVFRGKGDHFPGTVPAGSDVQAFVMEFLITFLLMFVISGVATDNRAVGELGGVAVGSTILLNVMIAGPITGASMNPVRSLGPAILHREFRGIWIYMVSPILGALAGTWVYNFIRTASFLQAHRQAQ* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01392 253 Pfam Major intrinsic protein 26 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 PRINTS Major intrinsic protein family signature 220 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 PRINTS Major intrinsic protein family signature 31 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 PRINTS Major intrinsic protein family signature 183 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 SUPERFAMILY Aquaporin-like 27 242 IPR023271 -
Lapu6g01392 253 CDD MIP 31 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Lapu6g01392 253 PANTHER AQUAPORIN NIP2-1 17 243 IPR034294 -
Lapu6g01392 253 NCBIfam MIP family channel protein 35 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01392 253 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01392 Lapu-Chr6 13717519 13719068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01392 27 251 Major Intrinsic Protein MIP AT5G37820 58.475 1.28e-90 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01392 K09874 - gmx:100786924 385.956