Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01391 ATGTCGGTGGTGGCTGATAATTCAGCAAACAGTGGAAACCACCAGGTGGTTTTAAATGTGAACGGTGATACCCCCAAAAAGTGTGATCACTCAACCAACCAAGACTGTGTACCTCTTCTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACGTACTTTTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGACAAGGACAAAGTGATAACACAACCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTTCCGCTGAAGCAGGTACCAGCTTATGTGATAGCCCAGGTGGTTGGATCCACACTTGCTAGTGGAACTCTCAGACTTATATTCAATGGCAAGAATGACCATTTCGCAGGAACACTCCCCGCTGGTTCTGACTTGCAATCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGAGTTGCAACCGATAACCGAGCGATTGGCGAGTTGGCAGGGCTTGCAGTTGGGTCTACGGTACTGCTAAATGTGATGTTTGCCGGGCCAATCTCAGGGGCATCGATGAATCCAGCAAGAAGCTTAGGGCCTGCAATTGTGCACAATGAGTACAGAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCGGGTGCATGGGCCTACAATTTTATCAGATACACAAACAAGCCAGTGCGTGAAATCACCCAGAGTGCCTCTTTCCTCAAAGGTGATCAAGCCGAGTGA 822 0.4708 MSVVADNSANSGNHQVVLNVNGDTPKKCDHSTNQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDKVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTKRFPLKQVPAYVIAQVVGSTLASGTLRLIFNGKNDHFAGTLPAGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPISGASMNPARSLGPAIVHNEYRGIWIYLVSPTLGAVAGAWAYNFIRYTNKPVREITQSASFLKGDQAE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01391 273 Gene3D Glycerol uptake facilitator protein. 4 264 IPR023271 -
Lapu6g01391 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lapu6g01391 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 SUPERFAMILY Aquaporin-like 37 262 IPR023271 -
Lapu6g01391 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g01391 273 PANTHER AQUAPORIN NIP2-1 23 267 IPR034294 -
Lapu6g01391 273 FunFam Aquaporin NIP1-1 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01391 Lapu-Chr6 13700677 13703155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01391 37 268 Major Intrinsic Protein MIP AT5G37820 63.362 4.09e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01391 K09874 - gmx:100812577 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03145 3 54824080 54826206 Lapu6g01391 6 13700677 13703155 PCT