Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01385 ATGATGGAGGAAGCTCAGGGCAACTCTAGTTCCTTGCCTCCTTTTCTCAGCAAGACTTATGACATGGTGGATGATCCTTCCACCAATTCCATTGTTTCCTGGAGTGTCACCAATAAGAGTTTCGTTGTTTGGAACCCACCAGAGTTTTCAAAGGATTTGTTACCCAGATTCTTTAAGCACAGTAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTATGGGTTTAGAAAGATTGATCCTGAACTATGGGAATTTGCAAATGAGGGTTTTGTGAGAGGTCAGCCACATCTTTTGAAGAATATTCATAGGCGCAAACCTGTTCATAGCCATTCTTTGCAGAATATTCAGGGTCAGGGCACTTCTCCACTGACTGAATCAGAAAGGCAGAGTTTCAAGGATGAGATACAGAAGCTTAAAGATGAAAAGGATCAAATTCTTCGGGAGTTAGAGAGGCATGAACAGGAGTGGAAAATGTACGAGGTACAACTACAATACTCAAATAATCGATTGGAACAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTTTCTGAAGTGCTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCCACTGACCGAAAAAGGAGACAGAAAACGTAGGTTGCCAAGAAGTGGCCTCTTCAGTGATGATGCTAGCATTGAAGATCATATGGAAACTTCCTCTGTATTACCTGGGGTGAATGCAGAGGGTGCCTCTATTTTCACACCTAACATGGAGCGGTTTGATCTACTTGAGTCATCCATTATGTTTTGGGAGAATATTGCACATGATGTTCAAAGTCATGCGAACATGGATCTTGATGAATCCACAAGTTGTGCAGATAGTCCAGCTATATCTTCTGTGCAGCTGGAGGTTGAAGTTCAACCTAAGTCACCTGGAATCAATGTGAATTCTGAGTCAGCTGTAGTGGCTGTTCCTGATCTTGATGCATCAAAAGAAGAACCTGGGGGAACAGTTCCTGTGGCTACTGGTGTTAATGATATATTCTGGGAACGGTTCTTGACAGAGAATCCTGGTTCTGAGAATCAGGAAGTGCATTCTGAAAGGAAAGATTCTGATGGCAGAAGTAATACCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1161 0.4212 MMEEAQGNSSSLPPFLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSKDLLPRFFKHSNFSSFIRQLNTYGFRKIDPELWEFANEGFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGTSPLTESERQSFKDEIQKLKDEKDQILRELERHEQEWKMYEVQLQYSNNRLEQLEKKQENLVSSVSEVLQKPGIALNLLPLTEKGDRKRRLPRSGLFSDDASIEDHMETSSVLPGVNAEGASIFTPNMERFDLLESSIMFWENIAHDVQSHANMDLDESTSCADSPAISSVQLEVEVQPKSPGINVNSESAVVAVPDLDASKEEPGGTVPVATGVNDIFWERFLTENPGSENQEVHSERKDSDGRSNTKFWWNIRNVNNPPEQMGHS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01385 386 Coils Coil 128 162 - -
Lapu6g01385 386 MobiDBLite consensus disorder prediction 351 365 - -
Lapu6g01385 386 Coils Coil 170 190 - -
Lapu6g01385 386 MobiDBLite consensus disorder prediction 110 126 - -
Lapu6g01385 386 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 225 IPR027725 -
Lapu6g01385 386 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Lapu6g01385 386 Gene3D - 7 105 IPR036388 -
Lapu6g01385 386 MobiDBLite consensus disorder prediction 345 369 - -
Lapu6g01385 386 FunFam Heat shock transcription factor 1 8 105 - -
Lapu6g01385 386 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g01385 386 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g01385 386 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g01385 386 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g01385 386 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g01385 386 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu6g01385 386 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01385 Lapu-Chr6 13632592 13634906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01385 8 385 HSF AT4G18880 51.385 5.68e-115 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu6g01385 HSF_DNA-bind 4.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01385 K09419 - gmx:100820566 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01385 6 13632592 13634906 Lapu6g01385 6 13632592 13634906 ECH
Lapu6g01385 6 13632592 13634906 Lapu3g03144 3 54806259 54808963 ECH
Lapu3g03144 3 54806259 54808963 Lapu6g01385 6 13632592 13634906 PCT