Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01384 ATGAAGTGGGGAGGAAGAAAGCATTCTTCAACTTCCTCTTCTTCTTCTGGCTCCTCCTTCATTTCTCATGCATCTCCTTTCTCTTGGTTCTCCAAGTTCAAGAATATGAGAATCAATTCAGAGCCAAGTGCTGCAAAAATGAAGCACAAGGCAAAGCCCAGTGGTTCGCAACAATATTTTTGTGAGGTTGGAGATAGATTTTGTGTAAAGGATGATGGTGATTTCTGTACACAACCTTTGAATGAAAAGAGGTGTGAGGATAAGAAGAATAATGAAGATATTGATGAGAGTGTCATTCCCTCCTCAAGTTGCCTTGGTAGTACAAGGGATGCTAAGAAACATGGAAAGAAAGGCACACTCGAGTTAAAGGAGAGGGATATTGGTCAAGGAGAACAAAGAGAGTTGTTGGATGATAAGGTTTCAAAGGAGACGGGTGAGTACAATAGAGAAAAGGAATACGAAAACTTAAGGAGGAGATTTGAGAGGAAAGCAAAAAAGGCTTTTCAAGAGCAACTCTTGACATTAGAAAGAGAAGTTGAGTTTGGATCCAGTAAAGCAGTGGAAAAAGATGTTTTGCAATTTGAATCACCCAGAACAATTTGCACCCCAAGAACACATGCTTTTTCCTCTTCAGCAATTTCAAGGAATCCCATCCTTGGAAATATAATAGAAAAATTTGAGAAAACTGAAAGGCTATCTCACAAGAAAGTGAGTTCTGAGAGGCAGAACTTGAAACAAACTGATGAGACGAAGGTAAAGATTAACAGGAAGAAGCAACCACATCATCTCAGCAGAGAACATCAGAGGAGGAAACCAAAGCCGAGCTCTAGGGTCAAAATACATTCTCCAAGGATGGTTTCTAAGGTTGAAATTTGCAAAATAAAGGCTCTGGAAGACACGAAGAAAGCGAAACTAAAGATGAAGAAAGAGAGGGAGGAAATTGTGGAGGAAATACCAGGATTAGAGAGCTTTGCTGTGATTAAGTCTTCAATAGATCCAAAGCAAGATTTCAGAGATTCAATGATTGAGATGATCGTGGAAAATCAGATTATTCAGCCAGAAGAAATGGAAGATCTTTTGGCATGCTATCTGACTTTGAATGCAGATGAGTATCATGATCTCATCATCAAAGTGTTCAGGAAGGTATGGTTTGACATTAGCCAAGGTGGTTTGGGTATTAAGCTAAATATGCAATTTGGTTACTAT 1206 0.3914 MKWGGRKHSSTSSSSSGSSFISHASPFSWFSKFKNMRINSEPSAAKMKHKAKPSGSQQYFCEVGDRFCVKDDGDFCTQPLNEKRCEDKKNNEDIDESVIPSSSCLGSTRDAKKHGKKGTLELKERDIGQGEQRELLDDKVSKETGEYNREKEYENLRRRFERKAKKAFQEQLLTLEREVEFGSSKAVEKDVLQFESPRTICTPRTHAFSSSAISRNPILGNIIEKFEKTERLSHKKVSSERQNLKQTDETKVKINRKKQPHHLSREHQRRKPKPSSRVKIHSPRMVSKVEICKIKALEDTKKAKLKMKKEREEIVEEIPGLESFAVIKSSIDPKQDFRDSMIEMIVENQIIQPEEMEDLLACYLTLNADEYHDLIIKVFRKVWFDISQGGLGIKLNMQFGYY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01384 402 MobiDBLite consensus disorder prediction 231 255 - -
Lapu6g01384 402 Coils Coil 150 178 - -
Lapu6g01384 402 MobiDBLite consensus disorder prediction 96 119 - -
Lapu6g01384 402 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 171 387 IPR038933 GO:0045892
Lapu6g01384 402 MobiDBLite consensus disorder prediction 1 22 - -
Lapu6g01384 402 Pfam Transcriptional repressor, ovate 330 386 IPR006458 -
Lapu6g01384 402 MobiDBLite consensus disorder prediction 231 280 - -
Lapu6g01384 402 Coils Coil 297 317 - -
Lapu6g01384 402 NCBIfam uncharacterized plant-specific domain TIGR01568 324 386 IPR006458 -
Lapu6g01384 402 ProSiteProfiles OVATE domain profile. 326 385 IPR006458 -
Lapu6g01384 402 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01384 Lapu-Chr6 13625678 13626883 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lapu6g01384 Ovate 9.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01384 - - gmx:102666239 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01384 6 13625678 13626883 Lapu6g01384 6 13625678 13626883 ECH
Lapu3g03143 3 54796387 54797607 Lapu6g01384 6 13625678 13626883 PCT