Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01378 ATGACTAGGGCTGTCCGTAGTAGGGTACTTAAAGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATTCATTTGACAAATTGCATTCATCTGAAGAACCATATGCACAAGAACAGCCCCATTCTGGCTGATAGGTCAATCATGAGGGACCTTGTTGTGCTGCAGAGATCGCGGTCTCTTCGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTGGTTGACATGCTTTTCAAAAGAGTTGAAAATGATGCGGCGTCTCAAGGGGGGAGAAGGTCTGTAGGTGTTGAGAGAAGGAAGGAAGGGAGAAGATTATCTGGAACTTCACCACCCTTGGCGAGTATAGCTTCATCAAGAGTTGCCCCAGGTGAGATTGGTAGGGGTAATGATGGTATAACGGCACCTAGTGAACGTAGCAGCAGGAGTGGAGTGGGAGATGGCAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAATGACAGGCCTGACTTTTTGGATGTTAATCAAGAGGACCTTCTCAATCAAGCTGGAAAAAGTTTGGCTGAAGATGTTACTTCCAGGCATTCCGAGTCTAAAGATAAAAAGAGCAAACAGAGGGGCAAGAATGTTCGAGATGCTCAAGTGAAGACCCTTTCTGAGCAGCTGAATGATGTTCCTTTGGATAGTGATGATTTAGCATCAACAAACATTCATTTTCGTGGAAGGTTTCCTAGACAGGAGAAAATTATAGAGGAGGCAGATTCCCGGGTGCGCAGTAATGGCAGTGGAATGAATAGGGGGAAAAGGCGGAAGTTTCGAAGTGCTCGAAGAACTCGTGTTGCTACAACATCAAGAGATATTGGAGCTGAGAATGAACTTTCTGTGGCTTCCAACTCAATAGCTCAGGCTTCAGCTCACCAGAAATATCACTTGGAGGAGGCTGATGAGTTTGCAGATGAAAATGTTACTAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGGGGTAAAACATTCCTTGACCTGGCTGGAAGAAGTTTGTCTTGTGGTTTATCTGACTCAAGGTTGAAGAAAGGTACATTTGCTGCCAATGGAAGACACATTTCTGAGATGCCTGTGGCATCTGAGCACTCGAGCTCATATACTAAGTCTGATGCAGAGGCACTGCCTTTACTAGTTGAGGCATCTGGTTCTCACGCAAGCACTGAAAATGCTTGTTGGGATCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAACTTATTCAAGCGAGATGTTGATTCTGATCTCGCTTCGGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGTCACAGTCGACACCAAAGTTTAACACAAAAGTACATGCCTCGAACCTTTAGAGATATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCTAACGCAGTAATGAAAAGAAAAGTTGGGTTGTTGTATGTGTTTTACGGTCCCCATGGCACTGGAAAAACCTCTTGTGCTCGCATATTTGCAAGAGCTCTGAATTGTAATTCTTCGGAACACCCAAAACCTTGTGGATTTTGCAATTATTGCATAGCACATGATATGGGCAAGAGTAGGAATATAAAGGAAGTAGGTCCAGTTAGCAATTTTGACTTTGAGAGCATCATGGACCTACTCGACAATATGATTGTTTCTCAGCTTCCGTCACATTACAGAGTGTTTATTTTTGACGACTGTGATACTCTGTCAACAGATTGTTGGAATGCTATATCAAAGGTCATTGACCGAGCACCTAGACGTGTCGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATACATACTCTGCAGTGGATTTCTACCAAAGAAGGTCTAGAAATTGAGAAGGATGCCCTGAAACTAATTGCATCAAGGTCCGATGGGTCTATGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTACTTGGACAGAGAATATCCGTTCCTCTTGTACAGGAACTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTTCTTGATTTGGCATTATCTGCAGACACAGTTAACACCGTGAAGAATTTAAGAGTGATCATGGAGACTGGTGTGGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACAGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTTCGGAGACAACCATTGTCCAAAGAAGACATGGAAAAGCTGCGCCAAGCTCTGAAAACTTTATCCGAGGCTGAGAAGCAATTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCTTTACTTCAGCTCGCTCCAGACCAGCAATATGTGTTGCCAACTTCATCTGATAATAGTTTCAACCATAGTCCGTTCACTCTAAAAGATGCAGATGCCAGAGAAGCTGCTAGACTAACTGGTAATCCTGTTGAGATTCCTAACAAAGCAAGACGATTATCAATGGATGCTGGAATTGAAAATTTCCACGCTGGAAGCTCTGCAGATGGTATGACAAGGGGTCTTGGTTCTGAGAAAAAGCGACATAGTGTGTCTGGTTTTACTCCTCAACATGCTCATTTGCAAACCAATGATAAGATTAAGATGAATGAGAGGCAGATTTTGGGTAAAAGCCGGAAAGAAATTGGAGAGATATGGTTAGAGGTGCTTGAGAGAATACAAGTTACTGGTCTGAAAGAGTTTCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGTGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAATTGACCAAATCTACTGCTGAGAAGTTCAGAGGCCAAATCTTACAAGCATTTGAATATGTCCTTGGATCTTCTATAACAATAGAAATTAGATGTGAGTCAAACAAAGATGCTGGCTCTTCTGTTCAACAACCTCTTACATTGCCTGCCACCAGTGATATTTTGTCTCAGATCAGAGACTTTAATGGTGTTGTTGCTCCAGCTCATCCAACATTAACTGATTCTGTTGAAAAGAGAAGGGGTGAAATTGTAGAGGAATCGTCTTCTCAAGTGGAGCACAAGAATAACGAGCAGCAGGTTGATGCTCATGGAACACCCTATAGAAAATTAGAAGGTACAAGTATAGGGCAGACATCAGCTTCCCAAAACAAGCCAATTTTTAAGTCGCAGTTAGACCAAAGAAAGCTTATGGAGCAAAATCAAAGCCGAAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAAGCAGAAGGCCAGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAAAAGCTTGAGCAAGAGAATTTGAGACTGGAGCCAAGATCAAGAAGCTTGCTATGCTGGAAAGCATCAAGAGCAACCCGGAGAAAGCTGTCACGGTTGAAAATTCGAAGCCGAAAACCACGTGCACTGCTGAATCTGGTCTCATGTGGGAAATGTCTGTCTACAAAATCTCCGAGGTAG 3576 0.4295 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDMLFKRVENDAASQGGRRSVGVERRKEGRRLSGTSPPLASIASSRVAPGEIGRGNDGITAPSERSSRSGVGDGRRVGREESGRKNDRPDFLDVNQEDLLNQAGKSLAEDVTSRHSESKDKKSKQRGKNVRDAQVKTLSEQLNDVPLDSDDLASTNIHFRGRFPRQEKIIEEADSRVRSNGSGMNRGKRRKFRSARRTRVATTSRDIGAENELSVASNSIAQASAHQKYHLEEADEFADENVTRAPKNGCGIPWNWSRIHHRGKTFLDLAGRSLSCGLSDSRLKKGTFAANGRHISEMPVASEHSSSYTKSDAEALPLLVEASGSHASTENACWDHDYSGELGLFGDNLFKRDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIKEVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIHTLQWISTKEGLEIEKDALKLIASRSDGSMRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFTLKDADAREAARLTGNPVEIPNKARRLSMDAGIENFHAGSSADGMTRGLGSEKKRHSVSGFTPQHAHLQTNDKIKMNERQILGKSRKEIGEIWLEVLERIQVTGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGQILQAFEYVLGSSITIEIRCESNKDAGSSVQQPLTLPATSDILSQIRDFNGVVAPAHPTLTDSVEKRRGEIVEESSSQVEHKNNEQQVDAHGTPYRKLEGTSIGQTSASQNKPIFKSQLDQRKLMEQNQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRSRKPRALLNLVSCGKCLSTKSPR* 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 260 275 - -
Lapu6g01378 1191 FunFam DNA polymerase III subunit gamma/tau 631 693 - -
Lapu6g01378 1191 Gene3D - 448 627 IPR027417 -
Lapu6g01378 1191 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Lapu6g01378 1191 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 1068 1082 - -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 1039 1082 - -
Lapu6g01378 1191 Gene3D - 631 693 - -
Lapu6g01378 1191 SMART AAA_5 489 630 IPR003593 GO:0016887
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 254 281 - -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 865 886 - -
Lapu6g01378 1191 Pfam DNA polymerase III, delta subunit 473 630 - -
Lapu6g01378 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Lapu6g01378 1191 Coils Coil 766 793 - -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 146 171 - -
Lapu6g01378 1191 NCBIfam DNA polymerase III subunit gamma/tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lapu6g01378 1191 FunFam DNA polymerase III subunit gamma/tau 452 629 - -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 88 211 - -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 187 210 - -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 1039 1056 - -
Lapu6g01378 1191 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Lapu6g01378 1191 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 459 844 - -
Lapu6g01378 1191 MobiDBLite consensus disorder prediction 438 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01378 Lapu-Chr6 13560638 13568202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01378 456 754 Core DNA Replication Machinery Family AT1G21690 23.355 3.83e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01378 - - pvu:PHAVU_006G172900g 2167.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01378 6 13560638 13568202 Lapu6g01378 6 13560638 13568202 ECH