LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu6g01364	ATGGAAGACGCCAGAGTGGTTGCTTGGCTCGTTTCCCTCTTTCTGTGTTATTGGGTGCTTGTTGTTGAGAGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGTATGATGAGTTTCGTGTTATGGATGGTTGGGATATTAATTCGGTTGATCCTTGCACTTGGTATATGGTTGGTTGCTCTGCCGAGGGCTATGTCGTTTCCCTGGAAATGACCAGTGCGGGTTTATCTGGAACGATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCATACATTGTTACTGCAGAACAATAAGTTATCTGGCCCTATACCGACTGAGATAGGAAAGCTGTTAGAGCTTCAAACCCTTGACCTTTCTGGTAACCAGCTTGATGGGGAAATTCCTAATTCTTTGGGCTTTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAGCTTGTTGCTAATCTCACAGGCCTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCGAAAGGTTATAGTATTTCAGGCAACAACTTCCTCTGCAACCCTTCCTCTCAAATTTGTATGGGCTTCTCAAAACCAGTTAATGATTCAACTGCAGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCAAAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGGTCCTTCTTGTCTTTTGGTTGCGTTGGTACAGGTCAAACATTCTATACACATCTTATGTGGAGCAAGATTGTGAATTTGATATCGGGCATCTGAAGAGGTTCTCTTTCCGTGAATTGCAAATTGCTACTGGAAATTTCAATTCAAAAAATATCCTTGGGCAAGGTGGTTTTGGTGTTGTCTACAAGGGATGTCTTTCAAATAAAATGTTGGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAACCTCTTGCGTCTTTATGGGTTCTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCATTGGACTGGAACAGGCGAATGCGTGTTGCTCTTGGGGCAGCACGCGGGCTTCTATATTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTATTAGATCAAAGGGATTCACATGTAACTACTGCAGTGCGAGGTACTGTAGGTCACATTGCTCCAGAATATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACACAAGGCACTTGATGCTGGAAATGTTCAGGTCCAAAAGGGAATGATACTTGATTGGGTTAGAACCTTATTTGAGGAGAAGCGGCTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCAGTAGAGTTAGAGAAGGCAGTGGATTTGTCTCTACAGTGTACTCAGTCACTTCCCTCTTTGCGGCCGAAGATGTCAGAAGTTCTGAAGGTTCTAGAAGGTCTGGTAGGGCAGTCAGTGCGGGCAGAGGAGTCACAAGGGGGAACTAACCTGTATGGTGAAAGGACTTGCAGTTTCTCACAAAACTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA	1875	0.4336	MEDARVVAWLVSLFLCYWVLVVESTDSLLSPKGVNYEVAALMSMKSKMYDEFRVMDGWDINSVDPCTWYMVGCSAEGYVVSLEMTSAGLSGTISSGIGNLSHLHTLLLQNNKLSGPIPTEIGKLLELQTLDLSGNQLDGEIPNSLGFLTHLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCNPSSQICMGFSKPVNDSTADTGSSQSTGGHHQRVLAVVIGFSCTFVISVVLLVFWLRWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLSNKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNVQVQKGMILDWVRTLFEEKRLEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPSLRPKMSEVLKVLEGLVGQSVRAEESQGGTNLYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR*	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu6g01364	624	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	34	215	-	-
	Lapu6g01364	624	Gene3D	Phosphorylase Kinase; domain 1	271	376	-	-
	Lapu6g01364	624	FunFam	Somatic embryogenesis receptor-like kinase 1	377	592	-	-
	Lapu6g01364	624	Pfam	Leucine rich repeat N-terminal domain	35	74	IPR013210	-
	Lapu6g01364	624	SUPERFAMILY	Protein kinase-like (PK-like)	285	577	IPR011009	-
	Lapu6g01364	624	PRINTS	Leucine-rich repeat signature	127	140	-	-
	Lapu6g01364	624	PRINTS	Leucine-rich repeat signature	172	185	-	-
	Lapu6g01364	624	ProSiteProfiles	Leucine-rich repeat profile.	126	149	IPR001611	GO:0005515
	Lapu6g01364	624	ProSitePatterns	Protein kinases ATP-binding region signature.	307	329	IPR017441	GO:0005524
	Lapu6g01364	624	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	9	572	-	-
	Lapu6g01364	624	FunFam	Somatic embryogenesis receptor kinase 1	271	376	-	-
	Lapu6g01364	624	Gene3D	Transferase(Phosphotransferase) domain 1	377	585	-	-
	Lapu6g01364	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	423	435	IPR008271	GO:0004672\|GO:0006468
	Lapu6g01364	624	Gene3D	Ribonuclease Inhibitor	34	214	IPR032675	-
	Lapu6g01364	624	Pfam	Protein kinase domain	302	571	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01364	624	SUPERFAMILY	L domain-like	36	207	-	-
	Lapu6g01364	624	SMART	serkin_6	301	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu6g01364	624	ProSiteProfiles	Protein kinase domain profile.	301	577	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu6g01364	Lapu-Chr6	13436126	13440777	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu6g01364	42	624	Receptor kinase-like Gene Family	AT5G45780	71.698	0.0	827

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Lapu6g01364		Pkinase	3.9e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu6g01364	-		-	ccaj:109812711	1165.6