Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01363 ATGTCCTCCTCTGTTATCAATGGCAATGATTCCCTCACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAGCCCAAACAGACTATTAGTTACATGGCTGAACGGGTTGTAGGAACGGGCTCGTTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAGGACAGAAGATACAAGAACCGTGAACTACAGTTAATGCGTGTTTTGGATCATCCAAATGTGATCTCATTGAAGCATTGTTTCTTTTCCACTACTAGTACAGATGAACTTTTTCTAAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCAATCGTCTATGTGAAACTTTACATGTACCAGATTTTCAGGGGATTGGCTTATATCCACACTGCTCCCAAAGTTTGCCACAGAGACCTGAAGCCTCAAAATATTCTGGTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCCAAATCTCTTGTAAAAGGTGAAGCTAATATATCATACATATGTTCGCGATTCTATCGTGCTCCAGAACTTATATTTGGTGCCACAGAGTATACAACTTCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAACTTCTTCTGGGCCAGCCATTATTCCCAGGAGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCAACTCGAGAGGAAGTACGCTGTATGAATCCTAACTACAATGACTTCAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTTCACAAAAAGATGCCGCCAGAAGCTATTGATCTTGCGTCTCGGCTTTTGCAATACTCCCCAAGTCTCCGGTGTACTGCGCTTGAAGCATGCACGCATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTACCAAATGGCCGTCCATTTCCTCCTCTATTTAACTTCAAACAAGAATTAACCGGAGCATCTCCAGAGCTTGTTAACAAGTTGATACCTGATCATGTGAAGCGGCAAACAGGGATACAATTTGTTCATCCTACAGGTAGTAGAATACATGGCCTGAAATTGTCAGAAATTAGAATGCTTTTGTAA 1167 0.419 MSSSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIVYVKLYMYQIFRGLAYIHTAPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKSLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPFPPLFNFKQELTGASPELVNKLIPDHVKRQTGIQFVHPTGSRIHGLKLSEIRMLL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01363 388 CDD STKc_GSK3 29 321 IPR039192 -
Lapu6g01363 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Lapu6g01363 388 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Lapu6g01363 388 SUPERFAMILY Protein kinase-like (PK-like) 33 342 IPR011009 -
Lapu6g01363 388 FunFam Shaggy-related protein kinase kappa 114 361 - -
Lapu6g01363 388 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Lapu6g01363 388 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 363 - -
Lapu6g01363 388 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Lapu6g01363 388 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01363 388 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Lapu6g01363 388 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01363 388 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01363 Lapu-Chr6 13429373 13434916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01363 38 356 MAP Kinase Gene Family AT3G59790 35.329 3.52e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lapu6g01363 Pkinase 4.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01363 K14502 - gmx:100779909 745.732