Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01360 ATGGCCGACGTAGTTTCGAAGACCCCTCCCGCCACCACCCCCACGAGCCACCACAAGAAGGAGCCATCGAACCTTCTATTGGGTCGTTTCGAGATTGGGAAGCTCCTTGGTCATGGAACCTTCGCGAAGGTCTACTACGCGAGGAACCTGAAAACCGGCGAAGGCGTGGCCATTAAGGTAATCGACAAGGAGAAGATTTTGAAAGGAGGTTTGGTGGCACACATAAAGCGCGAGATCTCCATCCTCCGCCGCGTGCGTCACCCCAACATCGTGCAACTCTTCGAAGTCATGGCCACCAAGAGCAAGATCTATTTCGTAATGGAATACGTTCGCGGGGGCGAGCTTTTCAACAAGGTTGCAAAAGGGAGGCTCAAGGAAGAGGTTGCGAGGAAGTACTTTCAGCAGTTAATCTCCGCGGTGGGGTTCTGCCACGCTAGAGGGGTGTACCATAGAGATCTCAAACCTGAGAATCTCTTGCTTGATGAAAATGGTAATCTTAAAGTGTCTGATTTCGGGTTGAGTGCGGTTTCTGATCAAATCCGACAGGATGGGTTGTTCCACACTTTTTGTGGGACACCTGCGTATGTTGCTCCCGAGGTTTTGGGGAGGAAAGGATACGATGGTGCCAAGGTGGATCTCTGGTCTTGTGGGGTTGTGTTGTTCGTGTTGATGGCGGGGTATTTGCCCTTTCATGATCAGAATGTTATGGCAATGTATAAGAAGATTTATAGAGGGGAGTTTCGGTGTCCCAGGTGGTTTTCTCCTGATTTGTCCAGGCTTCTCACGAGGCTTCTTGACACGAAGCCTGAAACCCGGATTGCGATTCCCGATATTATGGAGAACAAGTGGTTCAAGAAAGGGTTCAAGCAGATCAAGTTTTATGTTGAGGATGATAGGCTTTGCAATGTGGATGATGACGTGCTTTTGGACAACGATGATGACATTGCTTCTGTTGCTTCTTTTTCGGATTATTCGGTTTCGGAGTCTGATTCGGAGGTTGAAATTAGGAGGAAGAATGCTCCTTTTCCTAGACCTCCTAGTTTGAATGCTTTTGATATTATATCTTTTTCCCCCGGGTTTAATCTCTCTGGGTTGTTTGAGGAGAAGGAGGACGAGACCAGGTTTGTGACTGCTGCACCGGTTAACAGGATTATTTCCAAGTTGGAGGAGATTGCTCAGTTGGTCAGGTTTACTGTGAGGAAGAAGGATTGCAGGGTGAGTTTGGAGGGTACCCGAGAGGGGGTGAAGGGGCCTTTGACTATTGCTGCTGAGATTTTTGAGTTGACACCTTCTTTGGTTGTGGTGGAGGTGAAGAAAAAGGGAGGGGATAGAGCTGAGTATGAGAGGTTTTGTAACAATGAATTGAAGCCTGGACTGCAGAATTTGATGGTGGAGGAGTCTTCAACTTCTTCAGGGTTATCTACTCCTCAAACTTCCCTACTACGTGGCCTTTCTGAACCCGTGCCGGATATTTCTTCTGAAATCGGAAGCCCATGCTATATACTACCTTCTGATGAGTGA 1521 0.4806 MADVVSKTPPATTPTSHHKKEPSNLLLGRFEIGKLLGHGTFAKVYYARNLKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLGRKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPDIMENKWFKKGFKQIKFYVEDDRLCNVDDDVLLDNDDDIASVASFSDYSVSESDSEVEIRRKNAPFPRPPSLNAFDIISFSPGFNLSGLFEEKEDETRFVTAAPVNRIISKLEEIAQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLMVEESSTSSGLSTPQTSLLRGLSEPVPDISSEIGSPCYILPSDE* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01360 506 Gene3D Kinase associated domain 1, KA1 343 464 - -
Lapu6g01360 506 FunFam Non-specific serine/threonine protein kinase 21 109 - -
Lapu6g01360 506 ProSiteProfiles NAF domain profile. 343 367 IPR018451 GO:0007165
Lapu6g01360 506 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01360 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lapu6g01360 506 CDD STKc_SnRK3 29 283 - -
Lapu6g01360 506 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g01360 506 SMART serkin_6 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01360 506 Gene3D Transferase(Phosphotransferase) domain 1 20 338 - -
Lapu6g01360 506 ProSiteProfiles Protein kinase domain profile. 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01360 506 FunFam Non-specific serine/threonine protein kinase 345 463 - -
Lapu6g01360 506 SUPERFAMILY Protein kinase-like (PK-like) 26 285 IPR011009 -
Lapu6g01360 506 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 457 - -
Lapu6g01360 506 FunFam Non-specific serine/threonine protein kinase 19 339 - -
Lapu6g01360 506 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Lapu6g01360 506 Pfam NAF domain 345 401 IPR004041 GO:0007165
Lapu6g01360 506 CDD CIPK_C 349 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01360 Lapu-Chr6 13389389 13391380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01360 13 466 CBL-interacting serine-threonine protein kinases AT4G18700 79.560 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu6g01360 Pkinase 9.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01360 - - gmx:100814720 863.218