Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01344 ATGTCTACTCCTTCATCATCTTCTTCTATTTGGGTGCTGTCTAACATAAAGCTTCAGTTCTTTGCCCGCATCAGACGGTTTCTCCAATCCAAAGCAACCAGAAAGCGTTTTGATCCCTCTGATCGGTTTGACACAGCTAAGAGCAGAGGTGAACACAACAATAAAGCTGAAAATCTTGAAACAGTTCAGGTTATGAAGAAGCCCGAAGAGGAGGAGGAGGAAGAAGTGTCTGCGATCATGTTGCAGAGAACTGTGAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAGGAAGTAGCAGCAAAGGAGATTGAGAAGTTAGCCAAGGAAGATGTTAAGGTCAGAAAGTTGATAACAGAACTTGGGGTGGTGCCAGTGTTGGTATCTATGGCGGCGTCGCCGGTGGCTAGCCGCCGGCGAGCCGGGTTGACGGCGTTGATCCACCTGGCTGATGGAACTTACACGAACAAGGCTTTGATAATGGAGGCAGGAATATTGTCCAAGCTGCCAAAGACAATTGACCTTGTAGATGAATCAACAAGAAGTAAATTGGCAGAGTTACTTTTGTCACTGTCATCTCTAGCAAACACTCAATTCCCTCTTGCTTCATTAGACTTTCTCCCATTACTTAGACACATTTTTGAGACAGACACATGTTTTGACACCAAACAATCGTGTCTGGGTGCTTTGTATAACCTATCAACTGTATTAGAGAATGCATCCCCAATGGTTTCAAGTGGGGTGGTCCCTATCCTCTTGGAAGTGTCCTCATTAAAAGAAATTTCAGAGAAAGCACTTGCCACTCTAGGGAACTTGTCAGTGACTTTGATGGGGAAGAAAGCAATAGAGAACAGCACAATGGTCCCAGAAACCTTTATTGATATCTTGTCATGGGAAGATAAGCCTAAATGCCAAGAGTTATCAGCGTATATTTTGATGATTCTAGCACATCAAAGCTCATTGCAAAGAAAGAAAATGGCACAGGCAGGGATTGTTCCAGTGCTTCTTGAAGTGGTTTTATTGGGGAGCCCTTTGGCTCAAAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACTAAGATGGGGCCACATTCTGGTCCACAAACACCAAGATTTACAATGGGGTCACCCGTAAATCAAAGAGAAGCAAGAGAAGGGAAGAAAATGATGAAGAGTTTGGTGAAACAAAGTTTGCACAGGAATATGGAAATAATAACTCTCAGAGCAAACGCTGCAGGGGAGTCTTCTAAATTGAAGTCTTTGATTATTAGCACAAGTTCTAAGAGTTTACCTTACTAA 1308 0.4297 MSTPSSSSSIWVLSNIKLQFFARIRRFLQSKATRKRFDPSDRFDTAKSRGEHNNKAENLETVQVMKKPEEEEEEEVSAIMLQRTVKMLHFGSWEEKEVAAKEIEKLAKEDVKVRKLITELGVVPVLVSMAASPVASRRRAGLTALIHLADGTYTNKALIMEAGILSKLPKTIDLVDESTRSKLAELLLSLSSLANTQFPLASLDFLPLLRHIFETDTCFDTKQSCLGALYNLSTVLENASPMVSSGVVPILLEVSSLKEISEKALATLGNLSVTLMGKKAIENSTMVPETFIDILSWEDKPKCQELSAYILMILAHQSSLQRKKMAQAGIVPVLLEVVLLGSPLAQKRAMKLLQWFKDERQTKMGPHSGPQTPRFTMGSPVNQREAREGKKMMKSLVKQSLHRNMEIITLRANAAGESSKLKSLIISTSSKSLPY* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01344 435 MobiDBLite consensus disorder prediction 365 379 - -
Lapu6g01344 435 SUPERFAMILY ARM repeat 85 356 IPR016024 -
Lapu6g01344 435 SMART arm_5 152 192 IPR000225 GO:0005515
Lapu6g01344 435 SMART arm_5 235 273 IPR000225 GO:0005515
Lapu6g01344 435 SMART arm_5 193 234 IPR000225 GO:0005515
Lapu6g01344 435 SMART arm_5 110 150 IPR000225 GO:0005515
Lapu6g01344 435 MobiDBLite consensus disorder prediction 362 386 - -
Lapu6g01344 435 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 435 - -
Lapu6g01344 435 Gene3D - 53 399 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01344 Lapu-Chr6 13202352 13205151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01344 80 373 U-box Gene Family AT1G67530 29.836 1.11e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01344 - - gmx:100813828 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01344 6 13202352 13205151 Lapu6g01344 6 13202352 13205151 ECH