Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01317 ATGGGTTCTAAAGACAAACACGATGAGGACTCACTTAGTACAGGCCTTAAGGTGATGCTAGCTGCAGCTCTCTCTCTATTTGGTACCATGTTATTACTCATCATCTTCCATTTTAGTGTTAAATATTTCATTAGACGCCAACAAAGGAGACGCCAAAACGACCTTCTCTACCAGATCACCACTCAAATTGCACCAATTGATGTCAGTTCTGTGGAGCCTCGCAACCATGGCCTCCAAACTTCCATCATAGCCTCTTTACCTAAACTGTTCTACAACCAAACCGAACAGTTCAAGCAAGGCCAAGTCATAGAATGTTCGGTTTGCCTAGGCACCATTATGGAGGATGCAATTACTAGACTGCTACCAAATTGTAAGCACATTTTTCATGCTGATTGTGTTGATAAATGGTTTAATTCCAACACCACGTGCCCAATTTGTCGCACTGTGGCTGACCCAAAGGTGCAAGCAGAAGAACAGGGTCATTTAGCCACAAGGATCCACCACCAAGTCCAGCCCACAGCACCACCTGTTGTGGGTGGTGATGAGCTACAAGATGGTGGTGAAATGGAGAAGGTGGGGTGTTCAGGTTTGAGAATAGGATCTTTCCATAGGATGGTTACTAACAGGGAAGGATCAGGGAGGACTCATAGTTGTGATGAATCTACCATAGATATAGGAAGACACTGA 687 0.4454 MGSKDKHDEDSLSTGLKVMLAAALSLFGTMLLLIIFHFSVKYFIRRQQRRRQNDLLYQITTQIAPIDVSSVEPRNHGLQTSIIASLPKLFYNQTEQFKQGQVIECSVCLGTIMEDAITRLLPNCKHIFHADCVDKWFNSNTTCPICRTVADPKVQAEEQGHLATRIHHQVQPTAPPVVGGDELQDGGEMEKVGCSGLRIGSFHRMVTNREGSGRTHSCDESTIDIGRH* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01317 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Lapu6g01317 228 SMART ring_2 105 146 IPR001841 -
Lapu6g01317 228 SUPERFAMILY RING/U-box 91 157 - -
Lapu6g01317 228 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Lapu6g01317 228 Pfam Ring finger domain 104 147 IPR001841 -
Lapu6g01317 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 157 - -
Lapu6g01317 228 MobiDBLite consensus disorder prediction 209 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01317 Lapu-Chr6 13015104 13015790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01317 17 228 C3H Transcription Factor Family AT2G42360 29.646 5.22e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01317 K19038 - gmx:100786701 352.058