Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01314 ATGGGGACATGGCAAGAAGCAGCTCTAGTTGCTGACCGTGGAAACAATGCTAAAATACCAATTATTTCATTTTCTTCTCCCCCAATAATCCCTCCTTTAATGCAACATCGTTGGCCCTTTATGATTCAAATGGCAAAAGATCAGGCTGCACACATGAACTGCATAGCAGATATTATCCATGAGTTCAACTGGCAGAAGGTTATAGCTATATACGAAGACAACCCTTACAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGGTAACTCACAGATAGAGAACAGGTTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCAAAAGGGTTTGTTCTGGACGAATTGCTTAAGCTTTTGCCACTACAATCTCGTGTTTTTGTTGTACTTCAAGCAACATTCCCTATGATAACCCATTTGTTTAGAGAAGCTAAGAAAATAGGATTGTTGGGGAAAGATTCAGCTTGGATAATGAACGAGGGGATCACAAGTATGTTAGACTTTGCAAATAAATCTGTTTTATCCTCTATGGAAGGTACTTTAGGAATCAAAACCTATTATTCTACAAGTTCTCTTTCTTATATGCAATTGCAGGAAAATTTCCAACCTGAGCATACAAAACCAGGATCAGATGCATTACAAGCTTATGATAGCGTTATATTAATCACAAAGGCCTTGGAGAAAATGCATGGCAAATCTAGTAATTCAACGGTGTTCTTGGAAAAATTGTTATCTAGCGATTTCAATGGTTTAAGTGGTAATATAAGATTCAAAGATGGTCATCTATCCAAAACTTCAGTATTGAGAGTGACAAACGTGGTTAATAAGGAATGCAAGGAATTAGACTTTTGGACCCCAAAATTGAAGTTTGCTAAATCTCTTAAAATACTGAAAGACAGAGAAACAAAAGGTGATTATGCTACAAATATCTTAACTGGCCGAGTGGTTTGGCCAGGAGGCCTAACTTCTGCTGATCCTAAGGGATGGAAAATGCCGACCGAGACAGAACCTTTAAAAGTGGCGGTTCCAATAAACCCTGTTTTCGAAAATTTTCTGAAAGAAGACCCTCCAAAGAACTATGACGGTTTCTGTATTGAACTTTTCGACGAAGCACTAAAAATTCTGAGTGCCAAGTATGGTGGTGACATTCCGTATGTCTTTGAGCGCTTCAATGAATCCTATGATAAACTTATACTGAATGTAATAAACAAGTCCCAGGATGCTATTGTAGGAGATATAACAATACTCGCCAACCGATCAAAGGATGTGTCCTTCACTCAACCATACACTGATTCAGGCTTATCAGTGGTATTTCCAATGGAGACTGAAGGGTCAACATGGCTTTTTATGAAACCCTTTAGCTGGGAAATGTGGATCGCGACTATTTGCATCTTCCTCTACACAATGTTCATCGTATGGTTCCTGGAGCATAAGTTCAACCCAGATTTTGGTGGACCATTGAAAAGTCAGATCAGCACCACACTGTGGTTTGCCTTTTCTTCTGTATTTTATGCTCATAGGGAGAAAATAAATAGCAACTCTGCACGAGTAGTAGTTGCAACATGGCTATTTCTTGTGTTTGTTCTAAACTCAAGCTACACGGCCAACCTTTCGTCAATGCTTACTGTCAAACGATTGTCAGGAAGAGATATAGAGTGA 1671 0.3908 MGTWQEAALVADRGNNAKIPIISFSSPPIIPPLMQHRWPFMIQMAKDQAAHMNCIADIIHEFNWQKVIAIYEDNPYSGDSGMLSLFSEALQKGNSQIENRLVLPSFTSLSDPKGFVLDELLKLLPLQSRVFVVLQATFPMITHLFREAKKIGLLGKDSAWIMNEGITSMLDFANKSVLSSMEGTLGIKTYYSTSSLSYMQLQENFQPEHTKPGSDALQAYDSVILITKALEKMHGKSSNSTVFLEKLLSSDFNGLSGNIRFKDGHLSKTSVLRVTNVVNKECKELDFWTPKLKFAKSLKILKDRETKGDYATNILTGRVVWPGGLTSADPKGWKMPTETEPLKVAVPINPVFENFLKEDPPKNYDGFCIELFDEALKILSAKYGGDIPYVFERFNESYDKLILNVINKSQDAIVGDITILANRSKDVSFTQPYTDSGLSVVFPMETEGSTWLFMKPFSWEMWIATICIFLYTMFIVWFLEHKFNPDFGGPLKSQISTTLWFAFSSVFYAHREKINSNSARVVVATWLFLVFVLNSSYTANLSSMLTVKRLSGRDIE* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01314 556 SUPERFAMILY Periplasmic binding protein-like II 319 476 - -
Lapu6g01314 556 Gene3D - 49 211 - -
Lapu6g01314 556 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 555 IPR015683 -
Lapu6g01314 556 FunFam Glutamate receptor 450 555 - -
Lapu6g01314 556 Gene3D - 336 450 - -
Lapu6g01314 556 FunFam Glutamate receptor 51 216 - -
Lapu6g01314 556 SUPERFAMILY Periplasmic binding protein-like I 3 289 IPR028082 -
Lapu6g01314 556 Pfam Ligand-gated ion channel 458 551 IPR001320 GO:0015276|GO:0016020
Lapu6g01314 556 Gene3D - 451 556 - -
Lapu6g01314 556 SMART GluR_14 343 552 IPR001320 GO:0015276|GO:0016020
Lapu6g01314 556 Pfam Receptor family ligand binding region 6 266 IPR001828 -
Lapu6g01314 556 Pfam Ligated ion channel L-glutamate- and glycine-binding site 361 443 IPR019594 GO:0004970|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01314 Lapu-Chr6 12971276 12984626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01314 3 550 Ion Channels AT2G29120 35.043 1.39e-101 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01314 - - vun:114188616 969.918