Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01313 ATGATACGTGTGTATAATTTCCATCCAGAGCAAATAATAGAGGTTGATGGAGAACATGACATTGTGAATAAATTCAAAAGCAAAAAAATGCATGCTCTCTTTCTTGAGACCCCCTATGTGAAGGTTTTCTTGAATAAGTATCGCAAGGATTACACTGCAATTACAGCTGCCTATAAATTTGGAGGACTTGGCTTTGTATTTCAAAAAGGATCTCCCATGGCTAGAGACTTTTCTGAAGCCTTTTTAGCACTCGCAGAAAATGGAAAACTAAAAGCTTTGGAAGATCAATGGTTGACCCCTTCCCAATGCTCAAACGGCTCAAATTCTCCAGAAACTGAGAGCCTGACCCTCCGAAACTTTTGGATTCTCTATATCATAAGCAAAACGCATTTCCTTTCAACTAATCCTCAAGCACTAACAATGACCTTGCTCTTCTTTTATTTACTCATCTCCCTTGTTCTTATTAATGGCTACCAAGATAAAGCTACAAATGTAGGCAACCAAGTTATATCTGTTGGGGCAATCATTGATGTAAATTCTCGTATTGGGAAAGAACAGCAAGTAGCTATGGACATTGCAGCTCGAAGTTACAATAACACATCAAAGACCTACAAGTTGGCTCTCTATTTTCGGAACTCCACCAAGGATCCCCTCAGAGCCGTCACTCTTGCTGAAGAGATGATTAATAAGCAAAAGGTGCAAGTGATTATAGGGATGCACAGATGGTCAGAGGCAGCTCTAGTGGCTGAAATAGGAAGCCAAGCTCAAGTTCCTATCATAGCATTTGCAGAACCCACCATTACCCCACCGTCGATGACTAAACGGTGGCCTTTTCTGGTGAGAATGACTAAGAGTGGTTTAGCATATATCAAATGCATTACAGATATAGTGAAAGCTTTTGGATGGCAGAGAGTAGTGGCTATCTATGAAGATGATGCATATGGAGGTGATTATGGCATGTTATCACTGCTATCTGAGGCCCTCCAGGATGTGAGTTCATTGATTGATTACCATTTAGTTCTTCCTCCTATTTCTTCTCTGCATGATCCAGGAGGGTTTATACGTGTAGAGCTGTTGAAGTTGTTGCAAACCCAATCTCGCGTGTTCATTGTGCTGCAATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGACTCGTGGACAAAGAATCAGCTTGGATACTCCCAGAGAGCATAACAAATTTGTTGGACTCTGTCAACAGGTCTGCTATTTCCTGTATGGATGGAGCTTTAGGAATCAAGACCTACTACTCCGAAATAAGTACTGAGTACCAAGATTTTGAGGCTCAATTCCGGAGAACATTTTGGTCTAAGAATGTCGAGGAAGATAACCGCTACCCCGGATTTTATGCCTTGCAAGCATATGATAGCATTAAAATTGTGACCCAAGCAGTAGACAGAATGACCAGAAGAAACACTAGCAGCCCAAATAATTTACTAGGAGAAATACTGCGTAGCAGTTTTCTTGGTTTAAGCGGTAATATTCAATTTGAAGATGGGAAACTCTCCCAGACTTCTATTTTAAGGATAGTAAATGTGGCTGGGAAGAGTTACAAGGAACTATGCTTTTGGAGTCAACAATATGGGTTCACCTCAAACCTCCCTACAGGAAAAGGTGGATATTATGGGGCTGGTAATACAAAATGTTTCAGTGCTGTTCGGTGGCCTGGGAATCTGAAGCAGAATCCAAAAGGCTGGAACATGCCTACTAAACAAAATCCAATGAAAATTGCAGTCCGAAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGATCATAATGGTAATCCCGCAACATATAGTGGATTTTGCATTGATATTTTTCGGAGTGTGTACGACCTTTTGGGGTATGACTTGCCATATAAATATTATCCTATTGATGGAACCTACAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTATGATGCCGTCGTTGGGGACATGACCATACTAGAGGAAAGACTGCAGTATGTGGATTTTACGGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCATCAAAGTCTAGAGAGTCAGCATGGATGTTCACAAAACCCTTTACCTGCGAACTGTGGATGGTTACAGGTGCCATTTTGATTTACACAATGTTAGCGGTTTGGTACCTTGAGAAAGAATCTAATCCTGAGTTTCATGGCAATTGGAAGAGCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTCTTCGCTCATAGGGAAAAAATGCAAAGCAACTTAACTCGCGTGGTGATGGTCTCATGGCTCTTGCTAGTTCTGATCCTTACCTCATGTTATACTGCTAGCCTTTCTTCAATGCTCACAGTTAAACAACTGCAACCAAATGTCACAGATATTCAGTGGTTGAAGAGGAACAACATGAAAATTGGTTGTGATGGCGACTCATTTGTTAGGTCGTTCCTAGAGACAGTAGAACTGTTCCCGCCTGAGAACATAATAAATGTTACTGATGAATACAAGTATGATGATGCTTTTCAAAATAACAGCATAGCAGCTGCGTTTCTTGAACTCCCATATGAAAAGGTATTCGTTACTGAATACTGCAACAGATACACTGGTTCCACTCCCAGAACCAGATTTGGAGGACTGGGCTTTGTAAGTGATAATACTGTTTCAGATATTAATTCCCTTCAACAATAG 2712 0.406 MIRVYNFHPEQIIEVDGEHDIVNKFKSKKMHALFLETPYVKVFLNKYRKDYTAITAAYKFGGLGFVFQKGSPMARDFSEAFLALAENGKLKALEDQWLTPSQCSNGSNSPETESLTLRNFWILYIISKTHFLSTNPQALTMTLLFFYLLISLVLINGYQDKATNVGNQVISVGAIIDVNSRIGKEQQVAMDIAARSYNNTSKTYKLALYFRNSTKDPLRAVTLAEEMINKQKVQVIIGMHRWSEAALVAEIGSQAQVPIIAFAEPTITPPSMTKRWPFLVRMTKSGLAYIKCITDIVKAFGWQRVVAIYEDDAYGGDYGMLSLLSEALQDVSSLIDYHLVLPPISSLHDPGGFIRVELLKLLQTQSRVFIVLQSSLEMAIHLFKEASKMGLVDKESAWILPESITNLLDSVNRSAISCMDGALGIKTYYSEISTEYQDFEAQFRRTFWSKNVEEDNRYPGFYALQAYDSIKIVTQAVDRMTRRNTSSPNNLLGEILRSSFLGLSGNIQFEDGKLSQTSILRIVNVAGKSYKELCFWSQQYGFTSNLPTGKGGYYGAGNTKCFSAVRWPGNLKQNPKGWNMPTKQNPMKIAVRSRTSFSKFVKVDYDHNGNPATYSGFCIDIFRSVYDLLGYDLPYKYYPIDGTYNDLVQLVYNKSYDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPSKSRESAWMFTKPFTCELWMVTGAILIYTMLAVWYLEKESNPEFHGNWKSQISTALWFTFSSLFFAHREKMQSNLTRVVMVSWLLLVLILTSCYTASLSSMLTVKQLQPNVTDIQWLKRNNMKIGCDGDSFVRSFLETVELFPPENIINVTDEYKYDDAFQNNSIAAAFLELPYEKVFVTEYCNRYTGSTPRTRFGGLGFVSDNTVSDINSLQQ* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01313 903 FunFam Glutamate receptor 586 697 - -
Lapu6g01313 903 Gene3D - 7 61 - -
Lapu6g01313 903 Gene3D - 468 588 - -
Lapu6g01313 903 Gene3D - 696 828 - -
Lapu6g01313 903 FunFam Glutamate receptor 696 826 - -
Lapu6g01313 903 Pfam Bacterial extracellular solute-binding proteins, family 3 612 860 IPR001638 -
Lapu6g01313 903 Pfam Receptor family ligand binding region 187 525 IPR001828 -
Lapu6g01313 903 SMART GluR_14 588 892 IPR001320 GO:0015276|GO:0016020
Lapu6g01313 903 Gene3D - 589 695 - -
Lapu6g01313 903 Gene3D - 291 467 - -
Lapu6g01313 903 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 138 IPR015683 -
Lapu6g01313 903 SUPERFAMILY Periplasmic binding protein-like I 167 578 IPR028082 -
Lapu6g01313 903 Gene3D - 164 290 - -
Lapu6g01313 903 Gene3D - 62 97 - -
Lapu6g01313 903 CDD PBP1_GABAb_receptor_plant 171 546 IPR044440 -
Lapu6g01313 903 Pfam Ligand-gated ion channel 705 818 IPR001320 GO:0015276|GO:0016020
Lapu6g01313 903 SUPERFAMILY Periplasmic binding protein-like II 562 887 - -
Lapu6g01313 903 SUPERFAMILY Periplasmic binding protein-like II 7 100 - -
Lapu6g01313 903 FunFam Glutamate receptor 289 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01313 Lapu-Chr6 12971036 12984626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01313 135 890 Ion Channels AT2G29120 32.446 7.94e-128 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01313 - - gmx:100818619 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01313 6 12971036 12984626 Lapu6g01313 6 12971036 12984626 ECH