Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01309 ATGGGAAGCCAGAAAAACTACCAAGAACAAAGCAGGCTCTCCTTTTCCCAATCCCAAACAGAGTTGTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCAACACATTCCTCCCTCACCAAAGGCTCCACCAACCCCAATTCGGCCTCGACCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGCAAGTACGCCGCTGAGATTCGCGACTCGACTCGCCACGGCGCCAGAATATGGCTCGGCACTTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCGTTTAAGATGAGAGGCGCCAAGGCTTTGCTCAATTTCCCTGCCGAAATTGTAGCCGCAGCCACAGAGTTATCTTTCGATAATAATAATAACAATAATAATAATAGCTACGAGGCTGTTTCTGATTGTAGTGGTGGGAGCTCTTGCACGACCAATAATTCCACTCAGGTAAACGGGTGTGGATCAGAAAGCACAAGTAGCACGGGTTAG 558 0.5161 MGSQKNYQEQSRLSFSQSQTELLPFNENDPQDMVIYQVLNEANALSNTFLPHQRLHQPQFGLDPTRNIAKKHYRGVRRRPWGKYAAEIRDSTRHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAATELSFDNNNNNNNNSYEAVSDCSGGSSCTTNNSTQVNGCGSESTSSTG* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01309 185 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Lapu6g01309 185 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Lapu6g01309 185 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Lapu6g01309 185 PANTHER DNA-BINDING DOMAIN 44 163 IPR044808 GO:0003700|GO:0009873
Lapu6g01309 185 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Lapu6g01309 185 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Lapu6g01309 185 MobiDBLite consensus disorder prediction 164 185 - -
Lapu6g01309 185 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Lapu6g01309 185 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Lapu6g01309 185 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Lapu6g01309 185 FunFam Ethylene-responsive transcription factor 2 71 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01309 Lapu-Chr6 12936020 12936577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01309 23 134 AP2-EREBP Transcription Factor Family AT3G23240 53.571 7.69e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g01309 AP2 2.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01309 6 12936020 12936577 Lapu6g01309 6 12936020 12936577 ECH