Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01308 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACGGGTTGTGAAGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAACCCAAAACCTGAGCAAATTCGCATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCCAGGGATGAGATAAGAAAGATAAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCAAATGTGTTTTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACTCAAAGAACCAGAACCTTGAAACTCAACAAAACCCCACTTCTCTCCCTCAAATCACTGCACCCTCATCCTCATCTTCCTCCTCTGAGAAATCTTCTCCAAAAGAATTAATACCCTCCAAGACCTATTTTCAGACTCACAATGAGTCTTCTATGCTTCCACCACCACCACCATCTGCAGCTGCGGCCGCACAAACTGGGGCTTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAGTAGCACCTAGTACGGTGCCATCACAAGGGTTTTGCTTCTCGGAGCTGTCCAATGTTGTTCAACTTCAATCACCTCCTCAACATAACGTTGGTCCTTGCACTAGTCTCTTGCTCAGTGAGATCGTAGGACATGGTGCTGCTGCATCGAAGAAAGATCTAGAGCAAGACAAGTCTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCTCAACAACAGCTCCTACTACTACCACTGCTGTACCTCCCATCACTACCTCTACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGCATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGACCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCATGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGGTGCGCACATTAGCCATGCTTCTGTTGCAATAA 1146 0.4791 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNLETQQNPTSLPQITAPSSSSSSSEKSSPKELIPSKTYFQTHNESSMLPPPPPSAAAAAQTGAFFFPVQHHGQGVAPSTVPSQGFCFSELSNVVQLQSPPQHNVGPCTSLLLSEIVGHGAAASKKDLEQDKSLKIMHQPSLFNFCVTPSTTAPTTTTAVPPITTSTTTVLSPVIAQVQGMGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLVRTLAMLLLQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01308 381 SMART HOX_1 53 120 IPR001356 GO:0003677
Lapu6g01308 381 CDD homeodomain 54 116 IPR001356 GO:0003677
Lapu6g01308 381 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 373 IPR044557 GO:0003700|GO:0050793
Lapu6g01308 381 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Lapu6g01308 381 FunFam WUSCHEL-related homeobox 11 55 122 - -
Lapu6g01308 381 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Lapu6g01308 381 MobiDBLite consensus disorder prediction 39 62 - -
Lapu6g01308 381 MobiDBLite consensus disorder prediction 124 157 - -
Lapu6g01308 381 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Lapu6g01308 381 Gene3D - 55 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01308 Lapu-Chr6 12909640 12911793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01308 1 372 Wox Gene Family AT2G33880 50.374 2.42e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lapu6g01308 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01308 - - pvu:PHAVU_006G179900g 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01308 6 12909640 12911793 Lapu6g01308 6 12909640 12911793 ECH