Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01295 ATGGGGTTGATCGATCTGAACACCACCGAGGATGATGAAGCTCCATTATCCGCTTCTTCTTCATCTTCTTCTGCTTCGTCTTCTTCTGCTTCGTCTTCTTCTCACTCGGGGATAAGCACTTCTGCTTCAACCTTGGCTGTTCCTCCTCCTCCTCGTCCTTCCGTGTGCTTGGAACTGTGGCACGCATGTGCGGGTCCTTTGATCTCTCTGCCGAAGAAAGGAAGTGTTGTTGTCTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACCGCTTATGATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGACGAAGTATATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGTTTGCGTGAAGGTGAAATGGAAGCTGATGGGGAAGAGGAGGAGGACACTGAAGCCATGGTGAAGTCAACAACTCCACATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTTTCAGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTTGTGGCGAAGGATCTTCATGGCCTTGAATGGAGGTTTCGTCATATATACAGGGGCCAGCCACGGAGGCATTTGCTAACTACTGGGTGGAGTGCGTTTGTGAACAAAAAGAAGCTTGTTTCCGGAGATGCTGTGTTGTTTCTTAGGGGTGACGATGGAGAACTGAGATTAGGAATTCGTAGGGCAGCCCAGTTGAAAGGGACTGGTTCCTTTGCAGTTCCCACTGGTCAGCAATTGAATCCTGGAACTTTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCTTTTAGTGTTTGCTACAATCCCAGGTTTAGCTCTTCGGAATTCATCATACCTGTTCACAAATTCTTAAAGAGTGTTGATTGTTCTTATTTAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGGAGATTTACTGGATTAATTGCTGGAATCAGTGACGTTGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCTTACTGGTAAGGTGGGATTCCCTGGAAGCTGCTAGGCACAATAGGGTTTCGCCATGGGAAATTGAGCCATCTGGTTCTTCTTCAAGTTGCAGCAACGTGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAACGAAGATGGAATTTCCTTCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTCGATGGTATTAATGCCCAGAGTCCTCGGTTATATGACTTAGGGGGGTACTATCTTGGTCCAAACTGTTCTGGGATTCCTCCAACAGGAAATAACATCAGAATGCCAAATGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCGTATGGAAGAGCTTTGTCAATCGAGGAGGCTCGAGCTAATGGTCGCATTGGACATTTTGATGGTTATCAATTACTTAACTCCAGAAATGGGTGGTCTGTACAGATGCATGATAATGCTCCACATTTGCATGCATCCGTTACACCTGCGCAAGTGTCATCTCCATCATCCGTGTTAATGTTCCAGCAGGCAGTTAATCCAGTTTCGAACTGTGATTATAATAATAATAATAAGAAACATAGTAAGATGTACCAAGGTTTATGCACATCTGAAATGAAAGCTAGAACATTTGTATCTCCCCGATCTGATAATCTTACTTTCTCTAGGCGAGCTCCGGAAAGTGCTAGTTCTTTTGGTATGTTCGATGTTCATAATCAGTTGGGTAGTTCACAGTCACACAATTCTGTGTCAGCTTTGAGAAACAATCAAGAGTTGGTTTCCTCATGTAAAAGTAGTTGTAGACTCTTTGGTTTTTCATTGACCGAGGATGCACATGTTCCAAATAAAGAGGCTGATGCCTCTACCATCACTTTACCATTGAATGCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAGTTCCATCCCAGCCGGGCACTCCAGAGTAAGGCGGTTGGAGGTAACTGCACCAAGGGTGTGTTGCAGTGTTGA 2217 0.4538 MGLIDLNTTEDDEAPLSASSSSSSASSSSASSSSHSGISTSASTLAVPPPPRPSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQSLREGEMEADGEEEEDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKGTGSFAVPTGQQLNPGTFMDVVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLKSVDCSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDSLEAARHNRVSPWEIEPSGSSSSCSNVMAAGLKRTRIGMTSTKMEFPSPNGIGTSDFGESLRFRKVLQGQEILGVNTPFDGINAQSPRLYDLGGYYLGPNCSGIPPTGNNIRMPNAASDFSCNGTGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRIGHFDGYQLLNSRNGWSVQMHDNAPHLHASVTPAQVSSPSSVLMFQQAVNPVSNCDYNNNNKKHSKMYQGLCTSEMKARTFVSPRSDNLTFSRRAPESASSFGMFDVHNQLGSSQSHNSVSALRNNQELVSSCKSSCRLFGFSLTEDAHVPNKEADASTITLPLNAGPSFTRLVEDEFHPSRALQSKAVGGNCTKGVLQC* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01295 738 MobiDBLite consensus disorder prediction 12 45 - -
Lapu6g01295 738 Pfam Auxin response factor 291 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu6g01295 738 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 54 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu6g01295 738 MobiDBLite consensus disorder prediction 133 152 - -
Lapu6g01295 738 CDD B3_DNA 162 264 IPR003340 GO:0003677
Lapu6g01295 738 Gene3D - 328 401 - -
Lapu6g01295 738 MobiDBLite consensus disorder prediction 1 46 - -
Lapu6g01295 738 FunFam Auxin response factor 162 266 - -
Lapu6g01295 738 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Lapu6g01295 738 SUPERFAMILY DNA-binding pseudobarrel domain 157 271 IPR015300 -
Lapu6g01295 738 Gene3D - 162 266 IPR015300 -
Lapu6g01295 738 Coils Coil 130 150 - -
Lapu6g01295 738 SMART B3_2 164 266 IPR003340 GO:0003677
Lapu6g01295 738 FunFam Auxin response factor 327 398 - -
Lapu6g01295 738 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01295 Lapu-Chr6 12815692 12822066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01295 163 521 B3 DNA Binding Superfamily AT2G33860 60.331 5.29e-146 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu6g01295 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01295 K14486 - gmx:100789906 1225.31