Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01286 ATGGGGATGGACTACTATGGGATTTTGGAGGTTGACAAGAATGCCTCGGATGAAGAATTGAAGAAAGCCTATAGAAAGCTTGCAATGAAATGGCACCCTGACAAGAACCCAACCAATAAAAAAGAGGCTGAGATTAAATTCAAACAGATATCTGAAGCCTACGAGGTTCTAAGTGATCCCCAGAAGAGAGAAATTTATGATCGGTATGGTGAAGGTGGCCTTAAAGGTGGAATGCCAACACCGGATGAAGGTATGGCTTCCTTCTTCCGAACTGGAGATGGCCCACCACCATTTAGGTTCAATCCCAGAAATGCAAACAACATTTTTGCAGAAGTATTTGGGAGTTCAAACCCATTTGGAGGAATGGGAATGGGGTTTGGCTGTGGTGGCAGAGGCAGAGGCATGGGGATGAGGGGGGGATCATGGGTATCAAGGTCCTTTGGTGGAATGTTTGGCAATGACATGTTCAGTGAAGGCAGACCAACGAGTCAAGTTCCACGCCGCAAGGCTCCTCCCATTCAAAATACATTGCTTTGCAGCCTTGAGGAGTTGTACAAGGGGAGTACCAGAAAGATGAAAATCTCAAGGGAAATTGCACATGCAAGCGGGAGAGTTTTTCCTGTGGAGGAAATATTGAACATTGAAATCCAACCGGGATGGAAGAAGGGAACCAAAATCACTTTCCCGGAGAAAGGAAATGAGCAGCCAAATGTCATTGCAGCTGATCTTGTGTTTATCATTGATGAGAAACCTCACAGTGTATTTACAAGAGTTGGAAATGATTTGGTTGTGACACAAAAGATATCACTTACAGAAGCTGAAGCTCTACCAGGCCACACCATCCAACTTACAACTCTAGATGGCAGGGGTCTGAATATCGCCATAAACAACGCCATTGATCCAGATTACGAAGAAGTCATCACCGGGGAAGGCATGCCAATTTCCAAAGATCCTTCGAAGAGGGGTAACCTTAAGATCAAATTCAACATCGAAATCCCTGACATAGTTGGTGTCTGA 1017 0.4484 MGMDYYGILEVDKNASDEELKKAYRKLAMKWHPDKNPTNKKEAEIKFKQISEAYEVLSDPQKREIYDRYGEGGLKGGMPTPDEGMASFFRTGDGPPPFRFNPRNANNIFAEVFGSSNPFGGMGMGFGCGGRGRGMGMRGGSWVSRSFGGMFGNDMFSEGRPTSQVPRRKAPPIQNTLLCSLEELYKGSTRKMKISREIAHASGRVFPVEEILNIEIQPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHSVFTRVGNDLVVTQKISLTEAEALPGHTIQLTTLDGRGLNIAINNAIDPDYEEVITGEGMPISKDPSKRGNLKIKFNIEIPDIVGV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01286 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 334 - -
Lapu6g01286 338 FunFam DnaJ subfamily B member 13 3 123 - -
Lapu6g01286 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 263 IPR008971 GO:0006457|GO:0051082
Lapu6g01286 338 CDD DnaJ_C 171 334 - -
Lapu6g01286 338 Gene3D - 172 250 - -
Lapu6g01286 338 CDD DnaJ 4 59 IPR001623 -
Lapu6g01286 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lapu6g01286 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lapu6g01286 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lapu6g01286 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lapu6g01286 338 Gene3D - 252 334 - -
Lapu6g01286 338 FunFam Dnaj homolog subfamily b member 169 250 - -
Lapu6g01286 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 334 IPR008971 GO:0006457|GO:0051082
Lapu6g01286 338 Pfam DnaJ C terminal domain 174 333 IPR002939 -
Lapu6g01286 338 SMART dnaj_3 3 62 IPR001623 -
Lapu6g01286 338 SUPERFAMILY Chaperone J-domain 3 98 IPR036869 -
Lapu6g01286 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lapu6g01286 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lapu6g01286 338 Gene3D DnaJ domain 2 123 IPR036869 -
Lapu6g01286 338 FunFam DnaJ subfamily B member 13 252 334 - -
Lapu6g01286 338 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01286 Lapu-Chr6 12722194 12725387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01286 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 4.31e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01286 K09510 - gmx:100804763 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01286 6 12722194 12725387 Lapu6g01286 6 12722194 12725387 ECH