Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01277 ATGGCGCCCAGGGACAAGACCAGCGCCGTTAAGGTTAACCCTAACGGTAACGCAGGACTCAAAGAGGTGCATTTTCGGGGAGTCAGGAAGAGGCCCTGGGGGAGATACGCCGCCGAGATCAGAGATCCCACCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCTTACGACGCCGCCGCTCGCGACTTTCGCGGACCCAAGGCCAAGACCAATTTCCCTCCTCCATCCGATAATAATGTCAAGAACGCCAGCCCTAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGACGTCGCCGCCGATTCCTCCCCGCTTGACCTCAACCTCGCCCCAGCCGCCGTCTCCGCTGCCCGCTTCCCCTTCCAGCACCAGTTTCCCGTTTTTCCGGCGGCTGCCAACCAGGTTTTGTACTTGGACGCTGTCCTACGCGCCGGTTTGGGCGGTCCACGTGGCTTTGGGTTTGGCTACAATCAGCATCCCGTTGCGGCGAGTGAGTTCCACGCGACGGCTACGGCGAGTGACTCGGATTCGTCCTCCGTCATCGATCTGAACCACAACGAAGGGGAAGCTAAGGGGAGCGGTTCTAGAATGTTCGATCTCGACCTTAACCACCCTCCTCCGCAGGAGATGGCCTGA 666 0.6171 MAPRDKTSAVKVNPNGNAGLKEVHFRGVRKRPWGRYAAEIRDPTKKSRVWLGTFDTAEEAARAYDAAARDFRGPKAKTNFPPPSDNNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAARFPFQHQFPVFPAAANQVLYLDAVLRAGLGGPRGFGFGYNQHPVAASEFHATATASDSDSSSVIDLNHNEGEAKGSGSRMFDLDLNHPPPQEMA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01277 221 MobiDBLite consensus disorder prediction 80 103 - -
Lapu6g01277 221 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Lapu6g01277 221 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Lapu6g01277 221 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Lapu6g01277 221 MobiDBLite consensus disorder prediction 184 221 - -
Lapu6g01277 221 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Lapu6g01277 221 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Lapu6g01277 221 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Lapu6g01277 221 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Lapu6g01277 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 191 - -
Lapu6g01277 221 MobiDBLite consensus disorder prediction 71 111 - -
Lapu6g01277 221 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Lapu6g01277 221 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01277 Lapu-Chr6 12652590 12653255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01277 21 103 AP2-EREBP Transcription Factor Family AT5G44210 72.289 4.33e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu6g01277 AP2 9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01277 K09286 - gmx:100170742 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01277 6 12652590 12653255 Lapu6g01277 6 12652590 12653255 ECH