Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01276 ATGATGGCGTCTTCTTCTTCTTCGGGGTCTCGCGAGGGGCACTACAGAGGCGTTAGGAAGCGACCCTGGGGACGCTACGCCGCCGAAATACGTGACCCCTGGAAGAAGACACGTGTCTGGTTGGGCACATTCGATACTCCCGAGGAAGCCGCCCTCGCCTACGATGGCGCCGCCCGCTCCCTCCGCGGCGCCAAGGCCAAGACCAACTTTCCCCCGGCCCCCGCCCTCTGTCTCGACCTCAACGTACCATCCTCCGATCACCGCTGGCCTAACGTTCCCTCCCGCACCCTCGTTCTCACCGAGTTCCTCCACACCGCCGTTCTCAAAGATATTGAACCGCCGCAGCCTCTTCCCCCAGCAGCCGCCTCAATCCGCCGTGCCGATGGAGCTGTTCCCCTTGGTGGCGGAGTTCAGGTAGTGGAGGGCTCCCAAACAGCTTCGTTTTTGGGACTGGTTCGACGCGGGATCCCCATCGACTTGAACGAGCCTCCACCACTGTGGCTATGA 507 0.6252 MMASSSSSGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPALCLDLNVPSSDHRWPNVPSRTLVLTEFLHTAVLKDIEPPQPLPPAAASIRRADGAVPLGGGVQVVEGSQTASFLGLVRRGIPIDLNEPPPLWL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01276 168 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Lapu6g01276 168 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Lapu6g01276 168 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Lapu6g01276 168 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Lapu6g01276 168 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Lapu6g01276 168 FunFam Ethylene-responsive transcription factor 2 14 72 - -
Lapu6g01276 168 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Lapu6g01276 168 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Lapu6g01276 168 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 90 - -
Lapu6g01276 168 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01276 Lapu-Chr6 12624608 12625639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01276 5 168 AP2-EREBP Transcription Factor Family AT1G28360 48.731 1.06e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu6g01276 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01276 - - gmx:100802655 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01276 6 12624608 12625639 Lapu6g01276 6 12624608 12625639 ECH