Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01275 AAGCAGGATTCTGATGTACACGTCAGCGGAGCATCCCGAATCATTGTTGTGTCATCTGTGTTCCTTACCGTTGCGTGGTATTTTGTTGTCACATATCATCATGAGTTTGGGTCTCTGTCCGTGTCTCTCTGCCCCTGCGTGATTCCCAATTCCATTCGATTTACTGGTTTCCTTCTCATTAAGCCCCCCCCCCTCTCTCTGCGCTTTCAAATCCAATCCAATCCAATGTCTCTCCCTGATTCTCCCGTGGCCGCCGATGATATCGAAACCGATCCATCCGAAGACGAAGAGGAAGTCGAAGAAGAAATAGAAGAGGAGGAGGAGGAGGAAGTTGAGGAAGAAGTGGAAGAGGAGGAGATTGAAGAAGAAGTGGAAGAGGAGGAGATCAAGGAAGAAGTAGAAAAGGAAGAAGTAGAGGAGGAAGATGTAGAGGAGGAAGATGTAGAGGAGGAAGATGTAGAAGAGGAAGATGTAGAAGAGGAAGAAGTGGAGGAGGAAGAGGTTGAAGAAGTAGAGGAGGAAGAGGAAGAGACGGGGGTAGAAGAAGGGGAAGAAGAAGTCGAAGAGGGAGAACAAGAAGTAGAGGAAGTGGATGTAGAAGAAGAAGAGATGGAGGAAGAAGAAGAAGAGGTAGAAGAAGAAGAGGACGAGGGAGAACAAGAAGTAAAAGAAATGGGGCAAGAAGTCGAAGAGGAGGAAGGAGAAGAAGATAACCAAGAACAAGAAGAAGCAGTGGAAGATAAGAAGGAGGAGCAACAACAGCAACAAAAAGAAGCAGTGGAGGAGAAGAAGAGAGAGCAACAAGAAGAGGCAGCAGAGGAGAAGAAGAAAGAGCAAGAACAGCAACACGAAGAAGCAGTGGAGGAGAAGAAGAAAAAGGAACAATTGCATCAAGAAGAAGCAATGGAGGAGAAGGAGGGACAACAAAAACAAGAAGATGCAATGAGGGAGGACACATCGGCGGTGACAGGTTCTCTACCCGATGCCCATAAGGATCGGAAAGATTTCAGCCTACACAAGGAGGCCGAGGAGCAAGACAAAAACTTGGGGCCTGATTCTTCTGTGGCTGCAAACCCTGAAGTAATGCCACCATCTAGTGTGCATTGCATGGAAGAGAATGATGCCATACTCAAAATATCTGTTCCTTCATGTGAGATACTGACATCAAAAAAGGAAGAGCATCACCTCAAATGTGACATTCCAAGTCATTCAAAATCAAGAGAAAATCTAACTTATGTTGAAAATAGCAGAAGTCAAGGATTAGAAGTTGATGGTGAAAATGCTGGATCCTTTCTGCAGAAGGAAACACATGGGGGATACAGCGAGTTAGGTTGCAATAGCAAAGCTAATTTATACGATGATAATGAAATTGATTCCAAGGCCAGGGCCCCCAAGTCATCTAGTGATACTGGCCAAGATATGGTCATTGGCGTCCTTTCAAATGATTGTTTTGTTGAGGGTGCTAATGGTGGTCAGAATTCTAGGAACAATATCATGCAGTTAGAGATGGAGTCAAGGGATGATATGAAGCAAATGCCGTCAAGGACCAGAAGTCCGTCTCCCAGCGCTGACATTAAAAACAGAAACAAACGACCCAAAATTATATGTGATTTTTTTGCTAAGGGATGGTGTATCAGAGGTAGTTCTTGTAACTTTCTTCATATAAAAGATACTGTGGACAACATGGATCAAGAGGCTGAAGCTGACTCAGTTACTGCTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTGGGGAAAATGTTCAGAGAATAAGGATGAATGAACAAGAAGAAATCCCTAGTTGGTATCCATCTCAAGAAAAACAGAATTTTACGCCGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTACTTCAACAAGCAATTATTTCAGCCCAAATCAGAATGGAATGGCTACTCTTCGGAACCAACATATGTACAAAGGATACGCCTCCACTCTTTTGAGCCATTCACCTAATTCAAGCCTGGTTACTCAATTTCCGGCTTCAAGTATGTCACTCTCTCACCGGATTTCTGCTCAATCAGGATGTTCATTGCCTTTTAGTTCATCTTTGGGGCCTGGTAATGTGAACTCTCAAAAGCTTTTGAGCACTGATAAGAAATATCTCACATCTAAGTCCACCTTCTCTGGTTCAGGTAGGGAAGATTTTCCTCTAGTTAGTTCGTCCACGGTTCTATCTTATCCTACTGGATATAAATCAAAAATTTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCATCCTTTTTTATTACATCCATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCAAACGCACAGGCTTCATCACAGGCTCCGATATATGGTGATTCTGCCGTAGTTGGGAAACACATGTCCAGTCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATGTTATGAAAATGAGCCAAACAAAAATTCTGCTCCTCATGAAAAAGATTATCTTCCTACGGAAACAGAGATAACATCGGGAACTTATGTAAACTATCAAAATGGAAAAATTGTCACCGGAGAAAATACCTTTGGCGTTGCAGATAGTGCAAAAAGAGAGAGAGACATGACTGAGCATGATGCCAGACGTCTCGGTGAAGGATCACGGCACAAAACAAAGAGAGTAGACAAGGATAAGAAAAATCATGAAATGGATGTTGACTTTCATATGGATGGCAGCATGCAGAAGGAATCAAAGGCACTAAAAATGTTGCGTGCAGCTCTTGTTGATCATGTAAAAGAATTGTTAAAACCAGTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATCATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTCCGACCACAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGTGAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 3054 0.4253 KQDSDVHVSGASRIIVVSSVFLTVAWYFVVTYHHEFGSLSVSLCPCVIPNSIRFTGFLLIKPPPLSLRFQIQSNPMSLPDSPVAADDIETDPSEDEEEVEEEIEEEEEEEVEEEVEEEEIEEEVEEEEIKEEVEKEEVEEEDVEEEDVEEEDVEEEDVEEEEVEEEEVEEVEEEEEETGVEEGEEEVEEGEQEVEEVDVEEEEMEEEEEEVEEEEDEGEQEVKEMGQEVEEEEGEEDNQEQEEAVEDKKEEQQQQQKEAVEEKKREQQEEAAEEKKKEQEQQHEEAVEEKKKKEQLHQEEAMEEKEGQQKQEDAMREDTSAVTGSLPDAHKDRKDFSLHKEAEEQDKNLGPDSSVAANPEVMPPSSVHCMEENDAILKISVPSCEILTSKKEEHHLKCDIPSHSKSRENLTYVENSRSQGLEVDGENAGSFLQKETHGGYSELGCNSKANLYDDNEIDSKARAPKSSSDTGQDMVIGVLSNDCFVEGANGGQNSRNNIMQLEMESRDDMKQMPSRTRSPSPSADIKNRNKRPKIICDFFAKGWCIRGSSCNFLHIKDTVDNMDQEAEADSVTAHQKRKLKVEEGVGENVQRIRMNEQEEIPSWYPSQEKQNFTPRDNLFPENRFAFTSTSNYFSPNQNGMATLRNQHMYKGYASTLLSHSPNSSLVTQFPASSMSLSHRISAQSGCSLPFSSSLGPGNVNSQKLLSTDKKYLTSKSTFSGSGREDFPLVSSSTVLSYPTGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNAQASSQAPIYGDSAVVGKHMSSLNDDKSSVSSHNKCYENEPNKNSAPHEKDYLPTETEITSGTYVNYQNGKIVTGENTFGVADSAKRERDMTEHDARRLGEGSRHKTKRVDKDKKNHEMDVDFHMDGSMQKESKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIPTTDTAKQYVSSSRVKIAKLVNGYVNKYGKS* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 822 851 - -
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 245 317 - -
Lapu6g01275 1017 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 535 554 IPR000571 GO:0046872
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 76 360 - -
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 327 348 - -
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 87 244 - -
Lapu6g01275 1017 Gene3D - 522 594 - -
Lapu6g01275 1017 Coils Coil 93 318 - -
Lapu6g01275 1017 ProSiteProfiles Zinc finger C3H1-type profile. 530 557 IPR000571 GO:0046872
Lapu6g01275 1017 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 242 1016 - -
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 823 842 - -
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 506 527 - -
Lapu6g01275 1017 SMART c3hfinal6 531 556 IPR000571 GO:0046872
Lapu6g01275 1017 MobiDBLite consensus disorder prediction 886 914 - -
Lapu6g01275 1017 SUPERFAMILY CCCH zinc finger 530 554 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01275 Lapu-Chr6 12590866 12605418 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu6g01275 zf-CCCH 4.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01275 - - vra:106775763 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01275 6 12590866 12605418 Lapu6g01275 6 12590866 12605418 ECH