Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01272 ATGGATGAAAGTTGGAGTGAAGGGAAAAGGAGCATTAACTACAAGGAGGAGGAGGATGATTATGAAGAAGAGGAAGAGGAGGGAAGTGAGTATGGAGAGGATGGTAGGAAGAAGAGGGTGGCGACTAACAAGAGAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCATGTCAAGTTGATGGTTGTAATGCTGATCTAAGTGATGCTAAGCCCTACCACAGGCGTCACAAGGTCTGTGAGTACCATGCCAAGGCTCCTGCTGTACTCATTGCAGAGCAGCATCAACGGTTTTGCCAACAATGCAGTAGGTTTCATGAGCTATCAGAATTTGATGAATCAAAAAGGAGTTGTAGAAGACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATATGGACATTGA 414 0.4589 MDESWSEGKRSINYKEEEDDYEEEEEEGSEYGEDGRKKRVATNKRGSKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEQHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASEYGH* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01272 137 SUPERFAMILY SBT domain 55 134 IPR036893 GO:0003677|GO:0005634
Lapu6g01272 137 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 132 IPR044817 GO:0003677
Lapu6g01272 137 PIRSF SBP 3 137 IPR017238 GO:0003677|GO:0003700|GO:0009908
Lapu6g01272 137 Gene3D - 47 118 IPR036893 GO:0003677|GO:0005634
Lapu6g01272 137 MobiDBLite consensus disorder prediction 1 59 - -
Lapu6g01272 137 FunFam Squamosa promoter-binding-like protein 14 48 118 - -
Lapu6g01272 137 MobiDBLite consensus disorder prediction 113 137 - -
Lapu6g01272 137 MobiDBLite consensus disorder prediction 1 16 - -
Lapu6g01272 137 Pfam SBP domain 57 130 IPR004333 GO:0003677
Lapu6g01272 137 Coils Coil 14 34 - -
Lapu6g01272 137 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01272 Lapu-Chr6 12559462 12561466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01272 57 134 SBP-box Gene Family AT2G33810 74.359 1.52e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu6g01272 SBP 5.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01272 - - vra:106775516 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01272 6 12559462 12561466 Lapu6g01272 6 12559462 12561466 ECH
Lapu3g03048 3 53690204 53692766 Lapu6g01272 6 12559462 12561466 PCT