Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01271 ATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGGTTCCTTCGGTGGAAGTAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGGAGAAGCTACAACAGCAAACCCTCAAGTGCCCTCGTTGTGACTCATCAAACACTAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGAGGGTGCAGAAAAAACAAGCGTGTCAAGCGTCCAATAACAAACTCTTCTTCTGCTGCCATTGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACTGCTGCCTCGCAACCCCAGATCGACACTGCTTCAACCTCCAATCACATCAACCCTTTGTTTTATGGGTTGCCGAGTAGCTCCAGCGATGTGAATCTTCCACTGTTCCCTAGGTTTGGTTCTAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTCGTGTCCAATGAAGCTAGTGAGAATAACAGTTTTAGAAACGGGTTTGGTTCAAATAACGCGCTTGTTTCAAGTTATAATTCCATCTTTGGTTCTTCTTCAAGTTCTACATCCACTACTCCAGCTATGTCTTCACTGTTGAGCTCTACTTTGCTTCAACAGAAGTTCAGCAGTAGTGGCTTGAAAGATGGCGTTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAATCCCACTAGAGCAGTTGCAAATGACTAGTGATAACAGTGAGGCAGGGATGGTGGCTTTAAAAGACGTGAAAGTAGAATTAGGACCAAACAACAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGAATGTGGGCTTGTACGATCCTTCGCTATATTGGAATAATTCAGCAACAGCTATGGGTGTTTGGAACGACCAAGCTGCTAATATCGGTTCTTCAGTCACTTCTCTGATCTAG 1068 0.4532 MSGNCEKMVVIPPTTNQWPQVDDHKVLMGSFGGSNNSKVMEKPDQELVQEKLQQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPITNSSSAAIDTASSSNSSSALTAASQPQIDTASTSNHINPLFYGLPSSSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVVSNEASENNSFRNGFGSNNALVSSYNSIFGSSSSSTSTTPAMSSLLSSTLLQQKFSSSGLKDGVDSNTFQHGLGLIPLEQLQMTSDNSEAGMVALKDVKVELGPNNRLEWNGACQNQIQNVGLYDPSLYWNNSATAMGVWNDQAANIGSSVTSLI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01271 355 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Lapu6g01271 355 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Lapu6g01271 355 MobiDBLite consensus disorder prediction 115 143 - -
Lapu6g01271 355 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Lapu6g01271 355 MobiDBLite consensus disorder prediction 107 143 - -
Lapu6g01271 355 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 256 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01271 Lapu-Chr6 12528913 12531093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01271 57 355 C2C2-Dof Transcription Factor Family AT1G28310 42.405 6.25e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu6g01271 zf-Dof 2.6e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01271 6 12528913 12531093 Lapu6g01271 6 12528913 12531093 ECH
Lapu3g03047 3 53667749 53670310 Lapu6g01271 6 12528913 12531093 PCT