Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01270 ATGGAGCAAGGAGGTAGAGAAGGAGGTGACATGACCAAACTACCTCAGGATTCAAGAATGAAGGAGATGCAACAAGGGGATGCGCAACCTCAGGTTCAGGCGCCTCAACAACCCCAAAAGTGTCCTCGATGCGACTCTCTCAACACCAAGTTTTGCTATTACAACAACTATAGCTTGTCACAGCCTCGTTACTTTTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTAAGGAACGTTCCCGTCGGTGGCGGTTGCCGCAAGGGGAAGCGCGCCAAGAACTCCAATCCATCATCATCTGATAATTCCTCTTCCCGGTCGCTGCCGCAACAACCATCACAAGACGTGGTGGTTCAAACCCAACCACCACCTGTAACATCGGTGGTGAGGGCTAAAGACCCATCTTCAATTTTGGTTTCACCTTTCTACCAAAGTGGCGGGTACTTGTCTTCTCTGGCTGCTATGCATTCGCTCAATCCATCTTCCCACCCTTTTGATCAGTCTCTGAATAGTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTATCTGGTTTCAATGTTCAGCGGCCAATTGGGACAATTCGTCCACCGCAATTGTATCAAATGGGCAGTGGTCAAAGGGAGGTGGTGTCTCTCTATGATCAAGGTTTGGTTAATCCATCATCCAGCATAGCTAATACCAATACCAATAGCAGTAGTGTTTCTCACCATGATTGGCCTCAGAGCTTCATCAATAATAGTACTAATGCTAGCAATAGAGCCTCTGATGCCTCTTTGTGGAGCACCATCAGTACCACTATTGGTGGTAACTCTGAGAGGACTAGTGCTGGTGCTGGTACTGTTTCTGGGTCGTCTTTGGTTCAAAATCAATGGCCTGATATTCCAGGGTATGGCCCTCCACCGTGA 912 0.4836 MEQGGREGGDMTKLPQDSRMKEMQQGDAQPQVQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKNSNPSSSDNSSSRSLPQQPSQDVVVQTQPPPVTSVVRAKDPSSILVSPFYQSGGYLSSLAAMHSLNPSSHPFDQSLNSDALRSSNLGLLSGFNVQRPIGTIRPPQLYQMGSGQREVVSLYDQGLVNPSSSIANTNTNSSSVSHHDWPQSFINNSTNASNRASDASLWSTISTTIGGNSERTSAGAGTVSGSSLVQNQWPDIPGYGPPP* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01270 303 MobiDBLite consensus disorder prediction 272 293 - -
Lapu6g01270 303 MobiDBLite consensus disorder prediction 94 123 - -
Lapu6g01270 303 MobiDBLite consensus disorder prediction 272 303 - -
Lapu6g01270 303 MobiDBLite consensus disorder prediction 18 40 - -
Lapu6g01270 303 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Lapu6g01270 303 MobiDBLite consensus disorder prediction 1 17 - -
Lapu6g01270 303 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Lapu6g01270 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 234 IPR045174 GO:0003700|GO:0006355
Lapu6g01270 303 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Lapu6g01270 303 MobiDBLite consensus disorder prediction 83 123 - -
Lapu6g01270 303 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01270 Lapu-Chr6 12511047 12513300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01270 15 120 C2C2-Dof Transcription Factor Family AT5G60200 57.547 1.46e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu6g01270 zf-Dof 9.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01270 - - gmx:100817065 433.721