Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01265 TTCTCTTTTTTCATGGAACGAGTATTCTCCGCTGTTGAAGTTGAATTACCACACCAGTCTGCTGGTTGCACGAATAATACTGATATGGAGAACAACCCTAGTCCATCCGGAGTTGACAGAAAATTCATTGAGAGGAATAGAAGAAACCAAATGAAAGCTCTCTTCCGCAAACTCTACTCACTTGTGCCTCATCAAAGAGCAAAGGCGGTTTCACTGCCGGATCAGCTTGAAGAAGCAACAAAGTACATAAAGAAATTACAGATGGATATGGAGAAAATGAAGGAGAAGAAGAGCATGCTACTAGGAGTAGAAAGGGCAAATGTTAGAATGAATGGAGGCGGAGAGAGCGTAGGGTTAAAATCTCCACGGATTGAGATCCAACAAATGGGTTCAACCTTAGAGGTTGTTCTAATAACTGGGTTGGGTTCTCAGTTCACGTTCACTGAAACCATTCGTGTTCTTCATGAAGAAGGAGTCGATGTTGTTAACGCCAGTTATAGAGTTATCGAAGATGCAGTTTTCTATTCAATACACTGTCAGGATGAGAAATCTGCCAACGGAGCTGCTAGGATATCTGAGAGGCTAAAGAACTTCATCTATGACTCTAGCTACTGTTCTTTTTAA 624 0.4151 FSFFMERVFSAVEVELPHQSAGCTNNTDMENNPSPSGVDRKFIERNRRNQMKALFRKLYSLVPHQRAKAVSLPDQLEEATKYIKKLQMDMEKMKEKKSMLLGVERANVRMNGGGESVGLKSPRIEIQQMGSTLEVVLITGLGSQFTFTETIRVLHEEGVDVVNASYRVIEDAVFYSIHCQDEKSANGAARISERLKNFIYDSSYCSF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01265 207 Gene3D - 37 111 IPR036638 GO:0046983
Lapu6g01265 207 Pfam Helix-loop-helix DNA-binding domain 43 87 IPR011598 GO:0046983
Lapu6g01265 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 102 IPR036638 GO:0046983
Lapu6g01265 207 Coils Coil 76 96 - -
Lapu6g01265 207 MobiDBLite consensus disorder prediction 20 40 - -
Lapu6g01265 207 MobiDBLite consensus disorder prediction 20 34 - -
Lapu6g01265 207 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 36 200 - -
Lapu6g01265 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 86 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01265 Lapu-Chr6 12458442 12459737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01265 29 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.935 1.74e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g01265 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01265 - - gmx:100784418 275.404