Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01252 ATGGCACTTCAGCACTACATTTCCGGGGATTTGAAAACCGTCCAAAATTCTGTGACCGAGACAGAAAACTCCAATGGTTGTTTTGATTGCAACATCTGCTTAGACTTTGCACATGAACCAGTGGTGACCCTATGTGGCCACCTCTTTTGCTGGCCGTGCATCTACAAGTGGCTACTTGTCCAAAGTGATTCTCTTACAACTAATGAGCGCCCTCAGTGTCCCGTTTGCAAGGCTGTTATATCCAATAGCACAATGGTTCCACTTTATGGCCGTGGCCATGCCACAGCTGAAGAGAAAACATCTTCTTGTGATGTTTTGATACCTCCAAGACCACCTGCTTCATGTGCTCAAGTTCTTTTGGCAACATCATCTCGAAGGGGTCAGCAGCACCTTCCATACCGTAATCCTTACCAGGGTCACTACTTCAGCTCTCGTTCATACCAAGAAGAGGACGCCACTTCACGAATGCTCAATATTGGATCCCACCACCACCCTGTGACTGGGATGTTTGGCGAGATGGTTTATTCCAGAGTGTTTGGTAACCCAGAAAATTTGTATGCATACCCCAATTCTTATCAGCTGATGGGAAGTTCTACCCCTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATCTCAATTTTTCTCTTTTGCTGCTTCCTCATTTGTCTTCTTGTCTTCTAA 696 0.454 MALQHYISGDLKTVQNSVTETENSNGCFDCNICLDFAHEPVVTLCGHLFCWPCIYKWLLVQSDSLTTNERPQCPVCKAVISNSTMVPLYGRGHATAEEKTSSCDVLIPPRPPASCAQVLLATSSRRGQQHLPYRNPYQGHYFSSRSYQEEDATSRMLNIGSHHHPVTGMFGEMVYSRVFGNPENLYAYPNSYQLMGSSTPRLRRQEMQAHKSLNRISIFLFCCFLICLLVF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01252 231 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Lapu6g01252 231 SUPERFAMILY RING/U-box 26 89 - -
Lapu6g01252 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu6g01252 231 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 127 - -
Lapu6g01252 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Lapu6g01252 231 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lapu6g01252 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 127 IPR013083 -
Lapu6g01252 231 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01252 Lapu-Chr6 12325996 12328396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01252 23 217 C3H Transcription Factor Family AT4G27470 42.647 9.56e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01252 K10666 - gmx:100816864 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01252 6 12325996 12328396 Lapu6g01252 6 12325996 12328396 ECH
Lapu3g03026 3 53459868 53462447 Lapu6g01252 6 12325996 12328396 PCT