Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01241 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCTCTGAAACTGCTTGAAGCTGATATTCATCATGCCAATACCCTGGCATCAGATTTTCCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTATGGCAGCGCACTTGTTTCTCTTTTTGGTGCAATGGACAGATTGCAATCTTGCCGGAGCCCTAGGACTCTTAAGAATCCTAATATACAAGGTGTATGTAGATGGGACAACTACGATGTCTACCCATGAAAGGAAAGCAAGTATTAAAGAATTTTATGCTGTCATATATCCATCTTTGTTGCAACTGCAAAAAGGTGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTTTGAGAGGTATCGGAAAACAGACGAAGAGGAGCACATACAGCCTTCAGACATAGACATTGAAAGGGAAGAAGAATGTGGAATATGCATGGAGATGAACAGTAAGATTGTGTTACCTCACTGCAACCATGCCATGTGCCTGCAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGTGATAGTTTAAAGAGAGTAAACTCAGGTGATCTCTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGACAACAGTGACAAGGGAGAATCTTAGAAGGCTTTTCATGTACATAGATAAATTGCCTTTGATCATTCCGGACTCTCTTTTTGACACATATGACTCTCATCTAAGAGTCGCAGTGTTGCTTCCCACGTCTTGCAAAAAAGTATCCAACCCTGTGTTTACTGTGGGTTGGTGGTTGCTTCCCACGTCTTGCGAAGAAGTATCCAACCCTGTGTTTACTGTGGGTTGGTGGTGA 867 0.4279 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIKEFYAVIYPSLLQLQKGVTDTEDKKQKAVCFERYRKTDEEEHIQPSDIDIEREEECGICMEMNSKIVLPHCNHAMCLQCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMTTVTRENLRRLFMYIDKLPLIIPDSLFDTYDSHLRVAVLLPTSCKKVSNPVFTVGWWLLPTSCEEVSNPVFTVGWW* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01241 288 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lapu6g01241 288 FunFam RING/U-box superfamily protein 129 198 - -
Lapu6g01241 288 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Lapu6g01241 288 PANTHER RING FINGER PROTEIN 41, 151 8 245 - -
Lapu6g01241 288 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lapu6g01241 288 SMART ring_2 151 188 IPR001841 -
Lapu6g01241 288 SUPERFAMILY RING/U-box 145 196 - -
Lapu6g01241 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01241 Lapu-Chr6 12237442 12243197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01241 151 206 C3H Transcription Factor Family AT5G01960 39.286 2.14e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01241 K25840 - gmx:100789769 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03017 3 53391873 53396201 Lapu6g01241 6 12237442 12243197 PCT