Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01220 ATGATGGCGGATGAGGGATTCGGTTACGACTGCTTCTTGGACGGTGACGGGAACGCCGCCGATGACGATAAGTTCTGCATCGATCTGGAAACCGTTATGAGCGTTCTCGACGAGGATACCGATCCTTCGGAGAGTAGTCCCGAGGATTTTTCATTGAAAAATATTTCACCTGGTGAATCTGGCATCCATGACAATTTTCTACTTCAAAATGGGAATTCTTTGCTTGATTGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCCCAAACACTCTTGCTGGTGGTTACATGGACCATGAAGGTGATGATTTTTGCTTCACAGAAAGGACAGGAGTGTCCAATTGTGAGATTCCTGCTTACATAGGCACAAGGTTCCCTGATCCAGAGGGGAATTCAAGCAATGTAGCTGTATGTGGAGATAGTTTGAAACTGACTATGTGGAAATGTGAAAACGATAGCCAAATCAACCATGTAGGATATGGTGCAGAATCTGAACATGCTTCACGTGGCTCTGTTATTGAGAATATTGATGTAAAATTTGATGACTATGAAACCTATATGAAAGACACCACTGGACCTTCTGGTAAACAGGAAAATGACTCGTGTACATCGTTTGAAATGTCATTTGTGGATGCTGACAGATCGTCACATGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCTTCTTTTAATATTTACCAAAGTGTGGAGGATGTACCTGCTGTTGCGAACACCTCTGATTGTTTGTTTAATGGTGCTTATCCTCACGTGTGGGAAAGTGAAAAAATGACAAGGAACGTGAAGGTTACTAAAAGGGAGTTATTTACTGATTCAAGTGGTGGCATGCATTCCGTCATCAATGGGGGGATATCTTTTCAAGATACTCAATATACGTTCCCAGATAGTAAATATGAATGTTTTCCTGGTAGTGTTCTCTTTGAAGACAGTGCATCTGTGCAACACTCAACTTGTGCTTCATATATTTCATGTGAAGGTCAATCACTTAATGTCAAAACTGAAAGAGATGGACTGATTATGCCTTACCAAAATTCTGCTCACAGTGATGATGCTGAGTTCAATTTAGGTCAAGAGATGAAACAACTACCTGGTACTTTTCTTGCTGTTGGATCTCAGGGTAATGATTTATTCAAGTCTGAAGATAGTGTTACATTCTCAACGAATGAGAAAGCCAAATATTATCAAGATGCTATAGACGGAGCTGCCAATTACTTACCAAGAAATATGGGAAATTTAAATTTAAAACCATTTGACAAATCCTTGTATAATGTCCAGACCTCAATTGCAAGTGGGAAGCTATATAATTGTGTTATGAGTGAAAGCGAAGGAAAATCAATTGAACATAGAAGAAATTCTGATTCTCAGCTTCCAAAAGGACGTATTGACAGATCCAATATTGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTATAAGTCGATCAACAGAGCTTGGGAATTCCCTTGACACATCACTATCTTATAGAGGTTGTTATACTCATTCTTCTATGGTGGGAGTTATGAGACCCAAGGCACGCGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCAGATGGACTCTTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCAACCATTGCTTTAATATTAAAGGAAAGACCTCCTTTGCTGAATAAATGCAACACTGCAAAGAAAAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAGTGGTGTGGTGAAGAATGAATCTAATATGGTTCAGGATTTGTCTAGTAGAAATCCGAACAAGAACATGAACTTGTTAGTGCATGTAAAGGGAAGGCCGTCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTACGGCAATGGGATGAAGAGTTGCACAATAAGGTAACTGGCAAAGCAAATCTTTCTGTGCTAGTGTACCATGGTAGCAATCGAACGAAAGATCCTTACGAGCTTGCCAAACATGATGTTGTTTTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCCTACAGTATCAAGCAAGAAAAGGAAATGCCCTCCTAGTTCTAAAAGTAGCAAGAAGGGATTGGACACTGCTATGCTTGACTCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTAGTCCTGGATGAGGCCCAAAGTATCAAGAACCACAGAACTCAAGTTGCGAGGGCTTGTTGGGGTCTTAGAGCTAAGCGTAGATGGTGCTTATCAGGCACTCCTATCCAGAATGCAATTGATGATCTTTATAGCTACTTTAGATTTTTAAGATATGATCCTTATGCAGTGTACACATCATTTTGTTCCACAATTAAGATCCCTATCAGCAAAAGTCCATCCAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTTGAGTTGAAAAAGGTGGAATTTTCGCAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTGAAGCGATACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACGCACGAGAAGCGATTATCTCTTCTAAATTGTTTAGAAGCTTCTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAATGCCCTTCTACAAACTGCAAAATCCGACTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGACAATTTGCCTGGTTACTCTGGTTGTGATGTGGATGAATCTGAGTTTTGTTCTCTGAGTCAGCCATATAATTCTTCAAAAATTAGGGCCGCACTTGAGGTGTTGCATTCTCTGTCTAAACCACAACGCTGTGCTACCCAAAACAATTCTGTGCAGAGCACTCCTGGGGATAGTACTGATGGCCTTGGTAGCTCATCTTGTGCTGACCAAATGAAATCCTTGAATGAATTTCCTGAGAATCAAAATGTGTTGGATAGGAGCTCTAATAATTCAGTTGGTGGTGAGAAAGCCATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTTGATGGAACAATGTCTGTCTCTGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCCATAGACAGAGCGCATCGTATTGGACAGACTCGTCCTGTCACCGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCCCTGCAGCAAAAAAAGCGAAAAATGGTTGCATCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTGACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3966 0.4087 MMADEGFGYDCFLDGDGNAADDDKFCIDLETVMSVLDEDTDPSESSPEDFSLKNISPGESGIHDNFLLQNGNSLLDCEHENQGPSPQTFSSPNTLAGGYMDHEGDDFCFTERTGVSNCEIPAYIGTRFPDPEGNSSNVAVCGDSLKLTMWKCENDSQINHVGYGAESEHASRGSVIENIDVKFDDYETYMKDTTGPSGKQENDSCTSFEMSFVDADRSSHVATSTDSSICQGSNVPNDFSDYYPSFNIYQSVEDVPAVANTSDCLFNGAYPHVWESEKMTRNVKVTKRELFTDSSGGMHSVINGGISFQDTQYTFPDSKYECFPGSVLFEDSASVQHSTCASYISCEGQSLNVKTERDGLIMPYQNSAHSDDAEFNLGQEMKQLPGTFLAVGSQGNDLFKSEDSVTFSTNEKAKYYQDAIDGAANYLPRNMGNLNLKPFDKSLYNVQTSIASGKLYNCVMSESEGKSIEHRRNSDSQLPKGRIDRSNIEDESDVCIIEDISHPAPISRSTELGNSLDTSLSYRGCYTHSSMVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCNTAKKSELETLNLDADDDQLPESGVVKNESNMVQDLSSRNPNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHNKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDPTVSSKKRKCPPSSKSSKKGLDTAMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTHEKRLSLLNCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPSTNCKIRLSMSSVFSKVTLNSSFSDQACDNLPGYSGCDVDESEFCSLSQPYNSSKIRAALEVLHSLSKPQRCATQNNSVQSTPGDSTDGLGSSSCADQMKSLNEFPENQNVLDRSSNNSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM* 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01220 1321 ProSiteProfiles Zinc finger RING-type profile. 1008 1044 IPR001841 -
Lapu6g01220 1321 Gene3D - 1081 1320 IPR027417 -
Lapu6g01220 1321 SMART ultradead3 567 869 IPR014001 -
Lapu6g01220 1321 Gene3D - 540 635 IPR038718 -
Lapu6g01220 1321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1059 IPR013083 -
Lapu6g01220 1321 Pfam SNF2-related domain 591 969 IPR000330 GO:0005524|GO:0140658
Lapu6g01220 1321 SUPERFAMILY RING/U-box 1005 1053 - -
Lapu6g01220 1321 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 664 752 - -
Lapu6g01220 1321 Gene3D - 779 893 IPR038718 -
Lapu6g01220 1321 Gene3D - 666 753 IPR038718 -
Lapu6g01220 1321 CDD SF2_C_SNF 1165 1273 - -
Lapu6g01220 1321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 586 854 IPR014001 -
Lapu6g01220 1321 MobiDBLite consensus disorder prediction 747 767 - -
Lapu6g01220 1321 MobiDBLite consensus disorder prediction 1117 1137 - -
Lapu6g01220 1321 Pfam Helicase conserved C-terminal domain 1161 1263 IPR001650 -
Lapu6g01220 1321 SMART helicmild6 1180 1263 IPR001650 -
Lapu6g01220 1321 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 425 1320 - -
Lapu6g01220 1321 MobiDBLite consensus disorder prediction 747 782 - -
Lapu6g01220 1321 SMART ring_2 1008 1046 IPR001841 -
Lapu6g01220 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 900 1320 IPR027417 -
Lapu6g01220 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 892 IPR027417 -
Lapu6g01220 1321 Pfam Zinc finger, C3HC4 type (RING finger) 1008 1044 IPR018957 GO:0046872
Lapu6g01220 1321 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 774 904 - -
Lapu6g01220 1321 ProSitePatterns Zinc finger RING-type signature. 1023 1032 IPR017907 -
Lapu6g01220 1321 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1142 1316 IPR001650 -
Lapu6g01220 1321 CDD DEXDc_SHPRH-like 571 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01220 Lapu-Chr6 12039183 12048085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01220 494 1320 RAD5 or RAD16-like Gene Family AT1G61140 62.485 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu6g01220 SNF2_N 4.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01220 - - gmx:100805307 2042.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02991 3 53081419 53092222 Lapu6g01220 6 12039183 12048085 PCT