Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01213 ATGGGAGCAGAGACGATGAAGAGGTGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCATTCTCCGTCATGGAACCAAAGATTGGAACATTGTTGCCACCGAGCTCCGATCCCGAACAGTTTTTCCTTACACCATCACTCCTGAGGTATGTAAATCCAAATATGAAGATTTGCAACAACGATATTCTGGAAACAAGGCTTGGTATGAGGAGCTTAGGAAGACTAGAGTAGCAGAGTTGAAGAGATCTCTAGAAATATCTGAACACTCAATTGGGTCTCTTGAATCTAAGCTTGAAAGCCTGAAGGCTGGTAAGAATGAGAAAAGAGATGATTGTCATGTTGATAATGGATCAGGTCGTCCAAAGTTGCATGTAGCTTCACATAAATTAGAAAGAGTTGAATCCTCCACCAAAGACACATCAAAAGATGGACTATCTGCTGGGAGTTTCACACATGAAACTAGGTCAGATTGGTCTCCCAAATGCTTAGTTCCTTATGTGCCTGTTCAAGATTTGGAGACCAACTCCACAAAGCAGCTTAAAGTTTTGAATGTAGATAAGTTAGCATATACCATATATGAAGGAGAAGGAGGAAGTTTTAAAAAACGAAGAGGGAAGAGAAAAAGAAAGGATTGTGGTAAAAACACCAAGGAAGCAAGTATAACAGAAAGTGTTTTGTTAGATTCAGTTGATGTTATGTCATGGTGTAAAGAAAGTTCTACCAGTAACTATGGTGAAGTTGCCAAATCACGTGGTGTAAATTATCAAAATAGGAACTTCAAAAAGGGTAGGGTGGAGGACATGATGAAGATTTTGGATTCTATTTTTGAAACTAAATGTGCTTCTGCCTTTCGTCGTAGAATTGATAGTCAGAAGAGAGGGAGATACAAGAAAATGATTCGACAACACATGGACTTTGACACCATCAGGTCAAGAATTGGCAACCAAACAATTAAGTCAAGTGTCGAACTTTTTCGAGACTTGCTCCTACTCACTAACAATGCTTTAGTCTTCTATTCTATGAGCACGCGTGAATACAAATCTGCACAACTTCTAAGAGACATTGTCACCAAAAAAATAAAGGAAAGTTTGAAGGGCACGAGTAACAAAGTCACCACTCAAGTTACTGATGTGCCAATTAAATTACCTATGTATAATCTTCACGTGAAACCAAGAAGTATACGTTCAGGCAATAAAAAAGTAGTTGCAAAAGCAACTGGTGGAAATAACATTGTATCTGGAGTTTCACATGGTACTAAAAAATCTAGTAAAGTTGACTCTCCATCTTCTGTAGAATCCTTAAGCGTGAGGAAGAAAGGTTTTGGTCGATCGAAAAAGGTTGGACGAGGGTCTGCAAATCAAAAGCCTGCAATACCAATGAAGGGAAAGAAAAAAGTTAAGACCAAGTAA 1410 0.3943 MGAETMKRWGTWEELLLGGAILRHGTKDWNIVATELRSRTVFPYTITPEVCKSKYEDLQQRYSGNKAWYEELRKTRVAELKRSLEISEHSIGSLESKLESLKAGKNEKRDDCHVDNGSGRPKLHVASHKLERVESSTKDTSKDGLSAGSFTHETRSDWSPKCLVPYVPVQDLETNSTKQLKVLNVDKLAYTIYEGEGGSFKKRRGKRKRKDCGKNTKEASITESVLLDSVDVMSWCKESSTSNYGEVAKSRGVNYQNRNFKKGRVEDMMKILDSIFETKCASAFRRRIDSQKRGRYKKMIRQHMDFDTIRSRIGNQTIKSSVELFRDLLLLTNNALVFYSMSTREYKSAQLLRDIVTKKIKESLKGTSNKVTTQVTDVPIKLPMYNLHVKPRSIRSGNKKVVAKATGGNNIVSGVSHGTKKSSKVDSPSSVESLSVRKKGFGRSKKVGRGSANQKPAIPMKGKKKVKTK* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01213 469 Gene3D - 261 379 IPR036427 GO:0005515
Lapu6g01213 469 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 7 251 - -
Lapu6g01213 469 MobiDBLite consensus disorder prediction 412 434 - -
Lapu6g01213 469 SUPERFAMILY Bromodomain 266 364 IPR036427 GO:0005515
Lapu6g01213 469 SMART bromo_6 261 365 IPR001487 GO:0005515
Lapu6g01213 469 MobiDBLite consensus disorder prediction 130 152 - -
Lapu6g01213 469 ProSiteProfiles Bromodomain profile. 276 346 IPR001487 GO:0005515
Lapu6g01213 469 Pfam Bromodomain 269 350 IPR001487 GO:0005515
Lapu6g01213 469 CDD Bromodomain 266 360 - -
Lapu6g01213 469 CDD SANT 8 55 IPR001005 -
Lapu6g01213 469 MobiDBLite consensus disorder prediction 412 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01213 Lapu-Chr6 11963755 11968683 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu6g01213 Bromodomain 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01213 - - gmx:100793951 694.886