Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01200 ATGAACGACTTATTCTCAAACTCCTTTAAAAAATATGGTGATGTGAATAATCAATCTCTTTTTAATGATGTGGAAGCTGGAAAGGACAATGTCAACCTGGATAAGTTCTTCGACGAGGTGGAAAATGTTAAGGAAGACATGAGATTAGTTGAGAAGTTGTATAGAAAATTGCAAGAGTCCAATGAAGAGAGCAAGATTGTCCACAATGCCAAAACCATGAAAGATCTTCGATCCAGAATGGATCAAGATGTTCAACAGGTCCTCAAACGCGTTAAAATCATAAAGGGCAAACTTGAATCTTTGGAACGTTCCAATGCAGCCAACAGAAATCTTCCAGGGTGTGGTCCGGGTTCCTCAACAGATCGAACCAGAACCTCGGTGGTTAGTGGCTTAGGGAAGAAGCTGAAAGACATGATGGATGATTTTCAAGGATTGAGAGCCAGAATGCAAAATGAATACAAGGAAACCGTGGAACGTAGGTACTTCACCATAACAGGAGAGAAGGCTGATGAAGATACCATAGAGAACTTGATAGCAAGTGGAGAAAGTGAGAGTTTTCTTCAAAGGGCGATTCAAGAACAAGGGAGGGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGACATGATTCTGTTAAGGAGATAGAGAAGAACTTGATTGAGTTACATCAAGTGTTTTTGGATATGGCAGCTCTTGTAGAGTCTCAAGGTCAACAACTAAATAACATTGAGAGTCATGTGGCACATGCAAGTTCTTTTGTGAGAAGAGGCACAGAACAACTTCATGAAGCCAGAGAATACCAAAAGAGCTCAAGGAAGTGGACTTGTTATGCCATACTTCTTGGCATCGTACTTATCATTGTGCTCTTGTTTCCTCTCTTGACATCACTTTTACCTCACTTGTTGTATTGA 915 0.4044 MNDLFSNSFKKYGDVNNQSLFNDVEAGKDNVNLDKFFDEVENVKEDMRLVEKLYRKLQESNEESKIVHNAKTMKDLRSRMDQDVQQVLKRVKIIKGKLESLERSNAANRNLPGCGPGSSTDRTRTSVVSGLGKKLKDMMDDFQGLRARMQNEYKETVERRYFTITGEKADEDTIENLIASGESESFLQRAIQEQGRGQIMDTISEIQERHDSVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREYQKSSRKWTCYAILLGIVLIIVLLFPLLTSLLPHLLY* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01200 304 SMART tSNARE_6 198 265 IPR000727 -
Lapu6g01200 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu6g01200 304 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Lapu6g01200 304 Coils Coil 84 104 - -
Lapu6g01200 304 FunFam Syntaxin 132 196 296 - -
Lapu6g01200 304 PANTHER SYNTAXIN 44 289 IPR045242 -
Lapu6g01200 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lapu6g01200 304 Pfam SNARE domain 240 291 IPR000727 -
Lapu6g01200 304 CDD SynN 33 190 IPR006011 GO:0016020
Lapu6g01200 304 CDD SNARE_syntaxin1-like 202 262 - -
Lapu6g01200 304 Gene3D - 33 160 - -
Lapu6g01200 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Lapu6g01200 304 Coils Coil 40 63 - -
Lapu6g01200 304 Gene3D - 194 295 - -
Lapu6g01200 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Lapu6g01200 304 MobiDBLite consensus disorder prediction 106 126 - -
Lapu6g01200 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01200 Lapu-Chr6 11865233 11866147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01200 1 303 SNARE and Associated Proteins AT1G61290 76.238 9.29e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01200 K08486 - gmx:100818999 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02977 3 52905194 52906108 Lapu6g01200 6 11865233 11866147 PCT