Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01199 ATGGCTTCGGCTTCATCTTCTTCGTCCAAACTGTGCTTCAATTCTGACTGCAAAGAATTGAAGCCAGAAAGACCTAAGAAAGGTTGGAGACTCCGTAGCGGAGAACTAGCCGAGCTCTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGAAAGAGAATTCATTGTGGGTGTATTGTTTCAAGTCATTCTTTTATGTTGTTGGATCCTGGAGGAATTGAATGTTATGCATGTGCCCGCAAAAATATTATTATGCCATCAAACCTGCCGTGGCCACAGTCTTTTTCCCTTCAAAATCGTTTATCGGATAGACTTAGAGATCTGTCTGCCAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCATGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCATCTGACCTGATCCCAGATGTTCCTTCCTTAGCTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAACCTTGGAAAAGAAAAGTGAGGATTATCCTGGATTACCAGTTCATTGGAATGTCACCATTTGTCCACGAGAGATGAAGCTTATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTCCTTCTCAGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGCCTGTACCTAATTCATGCCAAAATGAAAGAAATGGCCAACTTGGGGTAACTGGAAGTCACCCTCAACAAACTCCACCACCTACAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCCCGGTACTGGCCCAGGTGTACTGATCTGGAACTACAACAAATATCCATAGATTCTAATTCTGTAATTACTCCCTTGTTTCAAAAGACCTTGAGTGCTAGTGATGCTGGACGAATTGGGCGCTTAGTGCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCCGAAGGATTGCCACTCAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTGGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGACACTGTAACGTTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTGTGCCATCTGACCAGGACAATGAAACCAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGACAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATATCTAGAAAAAGAAAGAGTGGCATATTGGGCTCAAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGCCCCCCTCCTAGCCACATTCCGAGCATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCGGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTACCAGCAAGCGCTCTTCTTCCCTCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCCTGTTCAGCTGCACAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTCCCAAGAAAATGAAGGCCACCAAACAGGATCCTGATAATGCTGAGGCTTTGGAGGGACTTGACACCCTCGCAAATTTAGCCATCCTGGGAGAGGGTGAGGCACTCCCAGCATCCGCCCAGGCCACAACTAAGCACCCTCGCCATAGACCTGGCTGTTCTTGCATTGTTTGCATTCAACCTCCCAGTGGAAAAGGCCCCAAACATAAGCAGACATGTACATGTAATGTGTGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGCAAAAAGCAACAGCAACAACATCCTCAACCATTACCTTCATCTGAAATTTTGCTTGACGAAGATTCATTACCCTGTAGTAACACAGGTGATAGTAGCCCGAACCACAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACCGAATAAAATCATCTGCTTCACCATTCAAAGGTCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTATCACCTGGATCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTACTGAGAGATATCTGAAGCAGCAGACTGTGAACTCCGGTACTGGAGATTCTGCTGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTCAGCAATGGTGTTACCCATGGCAGTAGTAGTCATAGTACTGATAAGGAACATGCCCAATCTTTATCAATGAATGTGTGA 2643 0.4457 MASASSSSSKLCFNSDCKELKPERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCRKRIHCGCIVSSHSFMLLDPGGIECYACARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSSDLIPDVPSLAELSNSFDKMYCNERLPASTLEKKSEDYPGLPVHWNVTICPREMKLMNGMRNEDKASSCLNMCQQPPSQKEESSPQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPTGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSAVPKKMKATKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSNTGDSSPNHNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVTHGSSSHSTDKEHAQSLSMNV* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01199 880 MobiDBLite consensus disorder prediction 439 455 - -
Lapu6g01199 880 CDD B3_DNA 334 435 IPR003340 GO:0003677
Lapu6g01199 880 MobiDBLite consensus disorder prediction 857 880 - -
Lapu6g01199 880 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Lapu6g01199 880 Gene3D - 568 621 - -
Lapu6g01199 880 MobiDBLite consensus disorder prediction 225 285 - -
Lapu6g01199 880 MobiDBLite consensus disorder prediction 718 880 - -
Lapu6g01199 880 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Lapu6g01199 880 SMART B3_2 336 437 IPR003340 GO:0003677
Lapu6g01199 880 MobiDBLite consensus disorder prediction 718 734 - -
Lapu6g01199 880 MobiDBLite consensus disorder prediction 225 298 - -
Lapu6g01199 880 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Lapu6g01199 880 Pfam CW-type Zinc Finger 569 611 IPR011124 GO:0008270
Lapu6g01199 880 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 839 - -
Lapu6g01199 880 MobiDBLite consensus disorder prediction 436 459 - -
Lapu6g01199 880 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Lapu6g01199 880 MobiDBLite consensus disorder prediction 825 845 - -
Lapu6g01199 880 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Lapu6g01199 880 Coils Coil 718 738 - -
Lapu6g01199 880 MobiDBLite consensus disorder prediction 752 768 - -
Lapu6g01199 880 Gene3D - 314 440 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01199 Lapu-Chr6 11851130 11863161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01199 283 871 B3 DNA Binding Superfamily AT4G32010 47.492 1.89e-165 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu6g01199 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01199 K09287 - gmx:100782114 1673.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01199 6 11851130 11863161 Lapu6g01199 6 11851130 11863161 ECH