Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01192 ATGTCTAGGGTGGCTTTCTTGCAGCGTCTCTCTAGCGCTTTCCGCGAAAACCAGTCACATCTTAAAATTGTGCTGCTTTGCACCGCCGTAAGTGGTGGTGGTCTTTTGGCCTATGGTGAGAGTGTTGCACCAGAAGAGGCAATTACGGAAAAGAAGAAGGTGGTGGTTCTGGGAACTGGTTGGGCGGCCACAAGTTTCTTGAAGAATCTGAACAATCCGAAATATGAGGTTCAAGTAGTTTCGCCGCGTAACTACTTTGCTTTCACTCCTTTGCTGCCTAGCGTTACTTGCGGGACCGTTGAAGCACGCAGCATTGTTGAACCCATTCGCAATATTTTTAAGAAGAAAAGGGTGGATGTACAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCAGAAAATAGGAAAGTTTACTGTCGATCAAGTTTGAACAATAATTTGAATGGGAAAGAAGAATTCGCCGTGGATTATGACTACTTAATAATCGCTGTGGGCGCTAATGTCAACACATTTAATACACCAGGAGTTATGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATCTGCCCGATGTAAGTGAAGATGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGGTCCGTTTGTATCCTGGGATAAAAGATTTCGTTAAAATTACTCTTCTGGAGGCCGCAGATCATATCCTGGGCATGTTTGACAAGAGAATCACTGTTTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTATCTGACAAAGAAATTTCTACTAAAGAACTGAAAAATGGAGGAGAGATTAAGACAATACCGTATGGAATGGCCGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACTCAAATCGGCCAGGCTAGCAGGCGTGCTCTAGCAACTGACGAATGGTTGAGAGTTGAAGGGTGCAACAATGTGTATGCGCTCGGTGATTGTGCTACGATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCGATCTTTAAGAAGGCTGACAAAGACAATTCAGGAACACTCACGGTTAAAGAATTTCAAGAGGTCATGAAAGATATCAGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCGCAATATTGCTGATTTGTTGAAGGAAGCCAAGGGGGATGATAAAAAGGAATCAATTGAACTGAATATCGAAGAATTTAAAACAGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAGCAAGGCACTTACCTGGCCAGGTGTTTTAACCGAATGGAAGAGAGTGAAATAAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATAGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTTGCTCCTTTGGGTGGAGAGAAAACAGCAGCCCAGCTTCCGGGAGATTGGGTTTCAATTGGTCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAAAGCATTGGTAGTTTCAGATTGGACAAGACGTTTTATTTTTGGAAGGGACTCGAGTAGCATCTGA 1734 0.4268 MSRVAFLQRLSSAFRENQSHLKIVLLCTAVSGGGLLAYGESVAPEEAITEKKKVVVLGTGWAATSFLKNLNNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIFKKKRVDVQFSEAECFKIDAENRKVYCRSSLNNNLNGKEEFAVDYDYLIIAVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDFVKITLLEAADHILGMFDKRITVFAEDKFRRDGIDVKTGSMVVKVSDKEISTKELKNGGEIKTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVMKDISERYPQVELYLKNKQMRNIADLLKEAKGDDKKESIELNIEEFKTALSKVDSQMKFLPATAQVASQQGTYLARCFNRMEESEINPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEKTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTKALVVSDWTRRFIFGRDSSSI* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01192 577 CDD EFh 379 454 IPR002048 GO:0005509
Lapu6g01192 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 378 IPR023753 GO:0016491
Lapu6g01192 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 421 576 - -
Lapu6g01192 577 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Lapu6g01192 577 Gene3D - 423 576 - -
Lapu6g01192 577 Gene3D - 42 422 - -
Lapu6g01192 577 PANTHER NADH DEHYDROGENASE 45 577 IPR045024 GO:0003954|GO:0006116
Lapu6g01192 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 42 404 - -
Lapu6g01192 577 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Lapu6g01192 577 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Lapu6g01192 577 SMART efh_1 379 407 IPR002048 GO:0005509
Lapu6g01192 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Lapu6g01192 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Lapu6g01192 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Lapu6g01192 577 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Lapu6g01192 577 Pfam EF hand 380 406 IPR002048 GO:0005509
Lapu6g01192 577 SUPERFAMILY EF-hand 368 464 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01192 Lapu-Chr6 11786130 11792508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01192 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 73.413 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01192 K03885 - gmx:100797657 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02961 3 52739549 52744638 Lapu6g01192 6 11786130 11792508 PCT