Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01185 ATGGGGAAAAAATTGACACCGGCGGAGGAAGGAAAAGCGGTGCCGGAGCATCTGCGTTGCAGCCGGACAGATGGGCGGCAATGGCGGTGCCGGCGGCGAGTGATGGAAAACCTAAAGCTCTGTGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAGAAGGTTCCTGAGTCGCTGAAGCTTCAGAGAAAGAGGCAAAACGACGCTGTTGACACTCAGATTGGGGGGAAGCGGAAGCGCAAATCGAGAGAAGCATTGGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGCACTCCAATCACGAGTTGAGGAAGGAGTTGCCGAACGGGGTTATGGCTATCGCTTCCGCTTCGACGCCCAATGTGGCTTCTTCTTCTCGTTACTTCAGGTCCAAGAATGTGGAGAGGGGTTCTGCTGGCAAGTTGCAGGATGTGCAGTGTGGACGAAACTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGATGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTCGGCACGTCAATATGAAGACAGTGAAAGTAAGGAACATTTGGCTGCTAAAAGCCGAGTTGATAGGATCTTGATTTTTCATTATTTGATCTGTGTGCTCCTTCCTGTGCTGAAACAAATAAAAGAAGACCACCACGTGGGTGTAGAAACAAAAGCAAAAATTAAAGGGAAAAGAATGTATGATATTATCATCAAACCGGTCAAGTTTGGCTGCAATGAGAATAATTACTGCAATCACTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCACGCATTAAGTCAAGGAAGCATCTCTGAAGAAAACAACTCTTCTATATCCAGGCTACCTGACAGAATCAGTGCTTGCATTTCTAGTGAAAGGTGCCTTTTGGATGATAAGGCCATTTCTAATGGCAATTTAACCGATACCTCAATGTTAACTGAGTGGACAAGTTGTAATGGTGCTGCCATTGTATCATGCCCACCTACAAAGCTTGGTGATTGTGGTAATAGTCACCTTGATCTGAACTATGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAGTCTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGTTGTTCAATGTGTGTTGAGAAAGATCGTAAAACTAGCAGATACAAGCAGTTACCAGAAGCGGCTCAAAGAGAAGATTCTGATGATAATTACTTATTTTATCCTACAGTTTTGGACATGGGTAGCAATCATTTTGAGCACTTTCAGAAACACTGGGGAAGAGGCCATCCTGTAGTTGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTCTGCACTTATCTTGAGGGGAGCATGACAAGATATGAGAATAATAAGGACTTACTCGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTGAGACAGTATTTTACTGGGTCTCTTAAATGTCAACCAAATAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTTCCAATTCAAGAATATATGAATCCCTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACGGGGGAGTACAAAACATGACATTGGACCATATGTTTATATTTCATACGGCTGTGCTGATGATAAAGCTGATTCCGTGACAAATCTCTGTTATGGCTCATATGACATGGTTAATGTTATGGCACATACCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTACTGAAAAAACACAAAGTTCTATGTCAAAAGGTGTCATCTAAAACTACTACTGAGCATGCAGAAGACAAGGAACAAAATGAAATGGAAAGTTTGGTAAGAGAAGGAACTGACTTTTTGAGGAGAGTCAATAGAACATCTTGCATCTCTAGTGAAGCCAAAACAATATGTAATCAGAATTTAGACACCAACATTTCCGGCGGTGAAGAATGTGGTTCTTATTTTGAAACTGAAAGGGCACAAAGCTTTTCACCTTTCCACAGGACAGTTCTAAGCACTGAAATGTCTCCAGATCATAATCCTCGAAATTCCTTTGAAAACTCATACAGTGATAAAAGGAAGAAGGCTACAGAGAATGCTGGTGCTCAATGGGATGTCTTTCGAAGACAAGATGTGCCAAAGCTCTTAGAATACCTTAAAAAACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCAATTCTAGATCAGAGCTTCTTTCTTAACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGCCCATACCAGATTAGGAATCCTAAGTGCTGTGTTCATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTTGTTGAGTGTATCCAATTGATTGATGAGGTCCGGCTGCTTCCAGAAGACCATCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATTGCCCTTCATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAGAACATGA 2880 0.4153 MGKKLTPAEEGKAVPEHLRCSRTDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKRQNDAVDTQIGGKRKRKSREALVNRRNQLELIRMVLQREVEKKKKESQLNLPLNLNLHSNHELRKELPNGVMAIASASTPNVASSSRYFRSKNVERGSAGKLQDVQCGRNLKKGRRKKCHWCQRSDSCSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCSARQYEDSESKEHLAAKSRVDRILIFHYLICVLLPVLKQIKEDHHVGVETKAKIKGKRMYDIIIKPVKFGCNENNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGSISEENNSSISRLPDRISACISSERCLLDDKAISNGNLTDTSMLTEWTSCNGAAIVSCPPTKLGDCGNSHLDLNYVFPLSWIKEMEAKAEEIVCSYDFPETLDKSSSCSMCVEKDRKTSRYKQLPEAAQREDSDDNYLFYPTVLDMGSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLEGSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPNKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPLSGLLNLAANLPRGSTKHDIGPYVYISYGCADDKADSVTNLCYGSYDMVNVMAHTMDIPLSTDQLSRISKLLKKHKVLCQKVSSKTTTEHAEDKEQNEMESLVREGTDFLRRVNRTSCISSEAKTICNQNLDTNISGGEECGSYFETERAQSFSPFHRTVLSTEMSPDHNPRNSFENSYSDKRKKATENAGAQWDVFRRQDVPKLLEYLKKHSDEFSYTSEHHEKMVHPILDQSFFLNNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVVECIQLIDEVRLLPEDHPAKVEKLEVKKIALHSMSTAIKEIRELTCRT* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01185 959 MobiDBLite consensus disorder prediction 53 85 - -
Lapu6g01185 959 MobiDBLite consensus disorder prediction 781 802 - -
Lapu6g01185 959 SUPERFAMILY Clavaminate synthase-like 498 945 - -
Lapu6g01185 959 SMART cupin_9 599 922 IPR003347 -
Lapu6g01185 959 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Lapu6g01185 959 Pfam WRC 15 56 IPR014977 -
Lapu6g01185 959 ProSiteProfiles Zinc finger RING-type profile. 185 231 IPR001841 -
Lapu6g01185 959 ProSiteProfiles JmjC domain profile. 618 922 IPR003347 -
Lapu6g01185 959 Gene3D Cupin 490 930 - -
Lapu6g01185 959 Coils Coil 85 112 - -
Lapu6g01185 959 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 957 IPR045109 GO:0032454|GO:0033169
Lapu6g01185 959 Pfam JmjC domain, hydroxylase 809 905 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01185 Lapu-Chr6 11719586 11725478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01185 11 54 GRF Transcription Factor Family AT2G22840 47.727 1.27e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu6g01185 JmjC 8.9e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01185 K15601 - gmx:100802129 1623.22