Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01179 ATGAGGAAGTGTGATCTCTGTAACAGTCCTGCAAAGTTGTTGTGTGAATCAGATCAAGCTAGCCTCTGTTGGGAATGTGATGCTAAGGTCCACAGTGCAAACTTCCTCGTAACCAAGCACCCCAGGATTCTTCTCTGTCATGTTTGTCAATCGCTAACGGCTTGGCACGGAACCGGACCCAAGTTTGTACCCACCATCTCCGTTTGCAACACCTGTGTTAACAACAACCGTGAGAGCTGCAGCCAACAGAATCATGATGAAGATGACGATGACCATGATGATGATGATGATGATGATGATGATGACACGATGGAGGATCATGTAGAAAACGATGAGGGTGGTGTGGAAGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCACCACCTCCAGCTTCCACTTCTTCAAATAGTGTTGCAACTGGTTCTACCAGGTCCTCTAATGTTGAAGAGGGTGCCTCGGATTAA 477 0.4633 MRKCDLCNSPAKLLCESDQASLCWECDAKVHSANFLVTKHPRILLCHVCQSLTAWHGTGPKFVPTISVCNTCVNNNRESCSQQNHDEDDDDHDDDDDDDDDDTMEDHVENDEGGVEEDDEENQVVPWTSTPPPPASTSSNSVATGSTRSSNVEEGASD* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01179 158 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Lapu6g01179 158 MobiDBLite consensus disorder prediction 79 158 - -
Lapu6g01179 158 CDD Bbox1_BBX-like 3 45 - -
Lapu6g01179 158 MobiDBLite consensus disorder prediction 87 123 - -
Lapu6g01179 158 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 147 - -
Lapu6g01179 158 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Lapu6g01179 158 SMART bboxneu5 1 45 IPR000315 GO:0008270
Lapu6g01179 158 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01179 Lapu-Chr6 11662365 11663667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01179 2 113 C2C2-CO-like Transcription Factor Family AT4G27310 47.321 1.44e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu6g01179 zf-B_box 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01179 - - vum:124826682 217.624