Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01171 ATGGAGAAAACCAAGTTCACCCTTTTATTTCTTGTTACTTTTTGCTATTTCCTATCCTTGTTTCCTAAGGCTTTGGAAGCAGAGGATGAAATAACTCCTCCACAAATAGTCAGCGGCAACCAGACACTAGTGTCACCTTCTCAAAATTTTGAACTGGGTTTCTTCAGTCCTGACAATTCCACCCACATTTATCTTGGAATTTGGTACAAGCGTATCCCAAACCAGACAGTTATTTGGATTGCAAATAGAGACAAACCACTAGTTAACTCTGGTGGCTCCTTGACATTCAGTGATGATGGCAAGCTCATTCTTCTAAGCCATACAGGAAGTGTTGCATGGTCCTCAAACTCATCTGGACCTGCAAGAAATCCAGTGGCACAGCTCCTAGATTCCGGAAATTTTGTGTTGAAAGACTATGGAAATGAGGGATATTTGTGGCAGAGTTTTGATTACCCTTCTGACACATTGATACCAGGAATGAAACTTGGTTGGAACTTCAAAACTGGCTTGAATCGACACTTGACTTCCTGGAAAACCACTTCTGATCCTTCTTCAGGAGAATACACCTATAGTGTGGATCCACGTGGCCTTCCTCAGCTTTTTCTTCACAAGGGAAACAAGCGGGTCTTCAGAAGTGGACCATGGTATGGACAACAATTCAAAGGTGACCCAGTTCTCAGTGCAAATCCAGTTTTCAAACCCATTTTTGTTTTTGATTCTGATGAAGTTTCTTACTCCTATGAGACCAAAGACACCATCATCTCAAGATTTGTGCTGAGTCAGTCCGGTTTGATTCAGCATTTTTCATGGAATGATCACCATTCTAGTTGGTTTTCTGAATTTTCAGTTCAAGGAGACCGTTGTGATGATTATGGCCTTTGTGGTGCTTACGGTTCTTGTGACATCAATAACTCTCCTGTTTGCAAGTGTTTGAAGGGTTTTGAGCCTAGGCTTCCGCAAGAATGGGAAAGGTCTGAGTGGTCAGATGGATGTGTTAGTAAAAACTCACAGGTTTGCAGCAATGGAGATGCATTTAAGCGGTTTACAGGAATGAAGCTTCCAGATGCTGCTGAGTTCCGTACAAACTACAGCATCAGCATTGATCACTGTGAGACAGAATGCTCCAAGAACTGCTCTTGTGTTGCTTATGCAAAACTAGATATAAATGCTAGCGGAAAAGGTTGTATTGCATGGTTTGGGGATTTATTTGATATGAGAGAGGTTTCTGTGAATGGACAAGATTTCTACCTGAGGGTTGCACCTTCGGAAGTAGGTAAGAACTCTGAAGGTTCAAATGCTGATGAAAGTAAAAGGAAGAAGCTCATACTGTTTCCTGTGGTTGCATCTGTAACTTCAACAATTATTGTATCAACATTGTGGTTGATAATTAAGAAATGCAGAAGAAATGAAACCAAAGAGACCGGTAGTCAGTTCAGTGTTGGCAGAGTCAGAAGTGAAAGGAATGAATTTGAACTTCCAAAGTTTGAGATTGCCATAATTGAAGCCGCCACTGGGAATTTCTCTATTTACAACAAGATTGGAGAAGGTGGATTCGGTCCTGTTTACAGAGGTCAACTTCCATCAGGACAGGAAGTAGCTGTGAAAAGGCTTTCAGAGAATTCTGGGCAAGGCCTGCAGGAGTTCAAGAATGAGGTCATTCTGATCTCCCAACTTCAGCATCGAAATCTTGTCAAGCTTCTGGGTTGTTGCATTGCCGGTGAAGATAAAATATTGATATATGAATACATGCCAAACAGAAGCTTGGACTCCTTATTATTTGATGAAACCAAGCGTTCTATGCTAAGTTGGAAAAAGAGGCTAGACATAATTATTGGCATTGCTCGGGGAGTTCTCTACCTTCACAGAGATTCAAGACTGAGAATAATCCATAGAGACCTGAAAGCAAGCAATGTTCTTTTAGATGGTGAAATGAATCCAAAAATTTCTGACTTCGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGAGAGTAGTGGGAACCTATGGATATATGCCCCCAGAGTACGCAATAGATGGACTCTTCTCTTTCAAATCGGATGTTTATAGCTTTGGGGTTTTACTCTTAGAGCTGTTGAGCGGAAAGAAAAACAAAGGATTTTTTCACCCAGATCACAAACTGAATCTCCTAGGCCATGCATGGCAGCTGTGGAATGAAGATAGGGCCTTGGGGCTGATGGATCCATTGCTTGAGAATCAGTTTCCCACATCTGAAGCTCTGAGGTGTATTCAAGTGGGTCTGTCATGCGTTCAACAGCTCCCAGAAGATAGGCCAACAATGTCATCAGTTCTTTTGATGTTGGACAGTGAGAATGTGTTGATCCCCCAACCTGGAAGGCCAGGATTATATTCGGAGAGATTTTTCTCAGAGACAAATTCATCATCACAAGGTGGACTCAACTCTGCTTCCAATGACACAACTGTTACTTCGCTTGAGGGTCATTGA 2478 0.4189 MEKTKFTLLFLVTFCYFLSLFPKALEAEDEITPPQIVSGNQTLVSPSQNFELGFFSPDNSTHIYLGIWYKRIPNQTVIWIANRDKPLVNSGGSLTFSDDGKLILLSHTGSVAWSSNSSGPARNPVAQLLDSGNFVLKDYGNEGYLWQSFDYPSDTLIPGMKLGWNFKTGLNRHLTSWKTTSDPSSGEYTYSVDPRGLPQLFLHKGNKRVFRSGPWYGQQFKGDPVLSANPVFKPIFVFDSDEVSYSYETKDTIISRFVLSQSGLIQHFSWNDHHSSWFSEFSVQGDRCDDYGLCGAYGSCDINNSPVCKCLKGFEPRLPQEWERSEWSDGCVSKNSQVCSNGDAFKRFTGMKLPDAAEFRTNYSISIDHCETECSKNCSCVAYAKLDINASGKGCIAWFGDLFDMREVSVNGQDFYLRVAPSEVGKNSEGSNADESKRKKLILFPVVASVTSTIIVSTLWLIIKKCRRNETKETGSQFSVGRVRSERNEFELPKFEIAIIEAATGNFSIYNKIGEGGFGPVYRGQLPSGQEVAVKRLSENSGQGLQEFKNEVILISQLQHRNLVKLLGCCIAGEDKILIYEYMPNRSLDSLLFDETKRSMLSWKKRLDIIIGIARGVLYLHRDSRLRIIHRDLKASNVLLDGEMNPKISDFGMARMFGGDQTEAKTKRVVGTYGYMPPEYAIDGLFSFKSDVYSFGVLLLELLSGKKNKGFFHPDHKLNLLGHAWQLWNEDRALGLMDPLLENQFPTSEALRCIQVGLSCVQQLPEDRPTMSSVLLMLDSENVLIPQPGRPGLYSERFFSETNSSSQGGLNSASNDTTVTSLEGH* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01171 825 Pfam Protein tyrosine and serine/threonine kinase 509 775 IPR001245 GO:0004672|GO:0006468
Lapu6g01171 825 Gene3D Hepatocyte Growth Factor 336 417 - -
Lapu6g01171 825 SUPERFAMILY Protein kinase-like (PK-like) 491 792 IPR011009 -
Lapu6g01171 825 CDD PAN_AP_plant 340 420 - -
Lapu6g01171 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Lapu6g01171 825 SMART blect_4 34 152 IPR001480 -
Lapu6g01171 825 Gene3D Phosphorylase Kinase; domain 1 468 582 - -
Lapu6g01171 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Lapu6g01171 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 582 - -
Lapu6g01171 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Lapu6g01171 825 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01171 825 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Lapu6g01171 825 CDD STKc_IRAK 513 779 - -
Lapu6g01171 825 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Lapu6g01171 825 CDD B_lectin 35 152 IPR001480 -
Lapu6g01171 825 ProSiteProfiles Protein kinase domain profile. 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g01171 825 FunFam Os04g0303100 protein 67 209 - -
Lapu6g01171 825 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Lapu6g01171 825 Pfam D-mannose binding lectin 76 178 IPR001480 -
Lapu6g01171 825 Gene3D Transferase(Phosphotransferase) domain 1 583 784 - -
Lapu6g01171 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 149 - -
Lapu6g01171 825 MobiDBLite consensus disorder prediction 801 825 - -
Lapu6g01171 825 Pfam PAN-like domain 339 405 IPR003609 -
Lapu6g01171 825 SMART ntp_6 340 419 IPR003609 -
Lapu6g01171 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 769 - -
Lapu6g01171 825 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Lapu6g01171 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Lapu6g01171 825 Gene3D - 23 149 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01171 Lapu-Chr6 11571627 11575406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01171 446 793 Receptor kinase-like Gene Family AT4G23230 52.707 6.83e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu6g01171 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01171 - - gmx:100804024 1511.51